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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
31/03/2021 |
Actualizado : |
31/03/2021 |
Tipo de producción científica : |
Trabajos en Congresos/Conferencias |
Autor : |
TSURUTA, S.; MISZTAL, I.; AGUILAR, I.; LAWLOR, T. J. |
Afiliación : |
SHOGO TSURUTA, University of Georgia, Athens, Georgia, USA; IGNACY MISZTAL, University of Georgia, Athens, Georgia, USA; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; THOMAS J. LAWLOR, Holstein Association USA Inc., Brattleboro, Vermont, USA. |
Título : |
Genome wide association study on cow mortality in three US regions. |
Complemento del título : |
Volume Species Breeding: Dairy cattle (Posters), 805. |
Fecha de publicación : |
2014 |
Fuente / Imprenta : |
In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.805. |
Idioma : |
Inglés |
Contenido : |
ABSTRACT.
Our objective was to conduct a genome-wide association study on cow mortality and 305-d milk yield for three lactations and determine if there were differences in the genetic architecture in three US regions. Genomic EBV of mortality and milk yield were estimated with a single-step genomic BLUP using a threshold-linear model. Genomic information was included on 34,506 bulls. Data consisted of the entire US data and three regions SE: southeast, SW: southwest, and NE: northeast for first three lactation cows calving from 1999 to 2008. As expected, a segment on chromosome 14 was significantly associated with milk production in all regions. Chromosome 14 showed a strong association with the first parity mortality for the entire US, with NE showing a strong association for all three parities. Within SE and SW regions, no single region stood out for mortality on chromosomes for three parities. |
Palabras claves : |
Cow mortality; Genome wide association study; Region. |
Asunto categoría : |
L01 Ganadería |
URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/15452/1/Tsuruta-et-al.-2014.-WCGALP.pdf
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Marc : |
LEADER 01529nam a2200181 a 4500 001 1061928 005 2021-03-31 008 2014 bl uuuu u01u1 u #d 100 1 $aTSURUTA, S. 245 $aGenome wide association study on cow mortality in three US regions.$h[electronic resource] 260 $aIn: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.805.$c2014 520 $aABSTRACT. Our objective was to conduct a genome-wide association study on cow mortality and 305-d milk yield for three lactations and determine if there were differences in the genetic architecture in three US regions. Genomic EBV of mortality and milk yield were estimated with a single-step genomic BLUP using a threshold-linear model. Genomic information was included on 34,506 bulls. Data consisted of the entire US data and three regions SE: southeast, SW: southwest, and NE: northeast for first three lactation cows calving from 1999 to 2008. As expected, a segment on chromosome 14 was significantly associated with milk production in all regions. Chromosome 14 showed a strong association with the first parity mortality for the entire US, with NE showing a strong association for all three parities. Within SE and SW regions, no single region stood out for mortality on chromosomes for three parities. 653 $aCow mortality 653 $aGenome wide association study 653 $aRegion 700 1 $aMISZTAL, I. 700 1 $aAGUILAR, I. 700 1 $aLAWLOR, T. J.
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Registro original : |
INIA Las Brujas (LB) |
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Registros recuperados : 81 | |
24. | | TSURUTA, S.; MISZTAL, I.; AGUILAR, I.; LAWLOR, T. J. Genome wide association study on cow mortality in three US regions. Volume Species Breeding: Dairy cattle (Posters), 805. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.805.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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25. | | FORNI, S.; AGUILAR, I.; MISZTAL, I.; DEEB, N. Genomic relationships and biases in the evaluation of sow litter size. Volume Genetic improvement programmes: Selection using molecular information - Poster Sessions, 0506. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 9., Leipzig, Germany, August 1-6, 2010. p. 0506.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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27. | | AGUILAR, I.; MISZTAL, I.; LEGARRA, A.; TSURUTA, S. Efficient computations of genomic relationship matrix and other matrices used in the single-step evaluation. Volume Methods and tools: Software and bioinformatics - Lecture Sessions, 0768. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 9., Leipzig, Germany, August 1-6, 2010. p. 0768. Acknowledgments: This study was partially funded by the Holstein Association USA Inc. and by AFRI grants 2009-65205-05665 and 2010-65205-20366 from the USDA NIFA Animal Genome Program. The authors thank P.M. VanRaden from Animal...Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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28. | | DE MATTOS, D.; BERTAND, J.K.; MISZTAL, I. Investigation of genotype × environment interactions for weaning weight for Herefords in three countries. Journal of Animal Science, August, v. 78, no. 8, p. 2121-2126, 2000. Article history: Received September 16, 1999 // Accepted April 3, 2000.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Tacuarembó. |
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29. | | TSURUTA, S.; MISZTAL, I.; AGUILAR, I.; LAWLOR, T.J. Multiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins. Journal of Dairy Science, 2011, v.94, no.8, p.4198-4204. OPEN ACCESS. Article history: Received February 9, 2011. / Accepted April 8, 2011.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
Biblioteca(s): INIA Las Brujas. |
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31. | | BERMANN, M.; AGUILAR, I.; LOURENCO , D.; MISZTAL, I.; LEGARRA, A. Reliabilities of estimated breeding values in models with metafounders. Research article. Genetics, Selection, Evolution : GSE, 2023, volume55, issue 1, article 6. OPEN ACCESS. doi: https://doi.org/10.1186/s12711-023-00778-2 Article history: Received 29 June 2022; Accepted 04 January 2023; Published 23 January 2023. -- Corresponding author: Matias Bermann, Department of Animal and Dairy Science, University of Georgia, Athens, GA, USA, email: mbermann@uga.edu...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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32. | | AGUILAR, I.; MISZTAL, I.; TSURUTA, S.; LEGARRA, A.; WANG, H. PREGSF90 - POSTGSF90: Computational tools for the implementation of single-step genomic selection and genome-wide association with ungenotyped individuals in BLUPF90 programs. Volume Methods and Tools: Statistical and genomic tools for mapping QTL and genes (Posters), 680. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.680.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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33. | | MASUDA, Y.; AGUILAR, I.; TSURUTA, S.; MISZTAL, I. Technical note: Acceleration of sparse operations for average-information REML analyses with supernodal methods and sparse-storage refinements. Journal of Animal Science, 2015, v. 93, p. 4670 - 4674. Published October 9, 2015 Article history: Received June 8, 2015.; Accepted August 7, 2015.
1. We acknowledge the work by François Guillaume in programming a hash function. We greatly appreciate the work of the two anonymous reviewers.
2. The AIREMLF90 program...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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34. | | DE MATTOS, D.; MISZTAL, I.; BERTRAND, J. K. Variance and covariance components for weaning weight for Herefords in three countries. Journal of Animal Science, January 2000, volume 78, Issue 1, pages 33-37. OPEN ACCESS. Article history: Received January 19, 1999. // Accepted August 8, 1999.
Research was funded by the American Hereford Assoc., Kansas City, MO; Canadian Hereford Assoc., Calgary, Alberta, Canada; and Instituto Nacional de Investigacion...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
Biblioteca(s): INIA Las Brujas. |
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35. | | ZHANG, X.; LOURENCO, D.; MISZTAL, I.; AGUILAR, I.; LEGARRA, A. Weighted single-step genomic BLUP: an iterative approach for accurate calculation of GEBV and GWAS. Volume Methods and Tools: Statistical and genomic tools for mapping QTL and genes (Posters), 681. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.681.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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36. | | ZHANG, X.; LOURENCO, D.; AGUILAR, I.; LEGARRA, A.; MISZTAL, I. Weighting strategies for single-step genomic BLUP: An iterative approach for accurate calculation of GEBV and GWAS. Frontiers in Genetics, 19 August 2016, Volume 7, Issue AUG, Article number 151. OPEN ACCESS Article history: Received 15 May 2016 // Accepted 04 August 2016 // Published 19 August 2016.
Specialty section:
This article was submitted to Statistical Genetics and Methodology, a section of the journal Frontiers in Genetics.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 2 |
Biblioteca(s): INIA Las Brujas. |
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38. | | GARCÍA, A.; AGUILAR, I.; LEGARRA, A.; MILLER, S.; TSURUTA, S.; MISZTAL, I.; LOURENCO, D. Accuracy of indirect predictions for large datasets based on prediction error covariance of SNP effects from single-step GBLUP. [abstract 22]. Issue Section: Animal Breeding and Genetics. Journal of Animal Science, 2020, Volume 98, Issue Supplement 4, Pages 6-7. doi: https://doi.org/10.1093/jas/skaa278.012 Article history: 30 November 2020.
ASAS Annual 2020 Meeting Abstracts.Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Las Brujas. |
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39. | | LEGARRA, A.; CHRISTENSEN, O. F.; VITEZICA, Z. G.; AGUILAR, I.; MISZTAL, I. Across-breeds ancestral relationships and metafounders for genomic evaluation. Volume Genetic Improvement Programs: Selection using molecular information, 075. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.075. Acknowledgements: This project has been financed by X-Gen and GenSSeq actions from SelGen metaprogram (INRA). We are grateful to the genotoul bioinformatics platform Toulouse Midi-Pyrenees for providing computing resources.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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40. | | FRAGOMENI, B.O.; MISZTAL, I.; LOURENCO, D.L.; AGUILAR, I.; OKIMOTO, R.; MUIR, W.M. Changes in variance explained by top SNP windows over generations for three traits in broiler chicken Frontiers in Genetics, 2014, v.5, no.Oct., Article number 332. OPEN ACCESS. Article history: Published 01 October 2014.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : B - 2 |
Biblioteca(s): INIA Las Brujas. |
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Registros recuperados : 81 | |
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