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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
29/04/2015 |
Actualizado : |
15/10/2019 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
GRASSO, A.; GOLDBERG, V.; NAVAJAS, E.; IRIARTE, W.; GIMENO, D.; AGUILAR, I.; MEDRANO, J.F.; RINCÓN, G.; CIAPPESONI, G. |
Afiliación : |
ANDRES NICOLAS GRASSO PALAS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; VIRGINIA GOLDBERG BIANCHI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ELLY ANA NAVAJAS VALENTINI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; WANDA IRIARTE GRECO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; DIEGO GIMENO, SUL (Secretariado Uruguayo de la Lana).; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN F. MEDRANO, Universidad de California Davis (UCD); GONZALO RINCÓN, Universidad de California Davis (UCD); CARLOS GABRIEL CIAPPESONI SCARONE, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
Título : |
Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep. |
Fecha de publicación : |
2014 |
Fuente / Imprenta : |
Genetics and Molecular Biology, 2014, v.37, n.2, p.389-395. |
DOI : |
10.1590/S1415-47572014000300011 |
Idioma : |
Inglés |
Notas : |
Article history: Received: August 29, 2013 / Accepted: March 16, 2014. |
Contenido : |
ABSTRACT.
The aim of this study was to investigate the genetic diversity within and among three breeds of sheep: Corriedale, Merino and Creole. Sheep from the three breeds (Merino n = 110, Corriedale n = 108 and Creole n = 10) were genotyped using the Illumina Ovine SNP50 beadchip®
. Genetic diversity was evaluated by comparing the minor allele frequency (MAF) among breeds. Population structure and genetic differentiation were assessed using STRUCTURE software, principal component analysis (PCA) and fixation index (FST). Fixed markers (MAF = 0) that were different
among breeds were identified as specific breed markers. Using a subset of 18,181 single nucleotide polymorphisms (SNPs), PCA and STUCTURE analysis were able to explain population stratification within breeds. Merino and Corriedale divergent lines showed high levels of polymorphism (89.4% and 86% of polymorphic SNPs, respectively) and moderate genetic differentiation (FST = 0.08) between them. In contrast, Creole had only 69% polymorphic SNPs and
showed greater genetic differentiation from the other two breeds (FST = 0.17 for both breeds). Hence, a subset of molecular markers present in the OvineSNP50 is informative enough for breed assignment and population structure analysis of commercial and Creole breeds. |
Palabras claves : |
OVINE SNP50. |
Thesagro : |
DIVERSIDAD GENETICA; OVEJA; OVINOS; RAZAS (ANIMALES). |
Asunto categoría : |
L10 Genética y mejoramiento animal |
URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/4414/1/Grasso-N.-2014.-Genetcs-and-Mol.Biol.v37n2.pdf
http://www.scielo.br/pdf/gmb/v37n2/a11v37n2.pdf
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Marc : |
LEADER 02237naa a2200301 a 4500 001 1052592 005 2019-10-15 008 2014 bl uuuu u00u1 u #d 024 7 $a10.1590/S1415-47572014000300011$2DOI 100 1 $aGRASSO, A. 245 $aGenomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep.$h[electronic resource] 260 $c2014 500 $aArticle history: Received: August 29, 2013 / Accepted: March 16, 2014. 520 $aABSTRACT. The aim of this study was to investigate the genetic diversity within and among three breeds of sheep: Corriedale, Merino and Creole. Sheep from the three breeds (Merino n = 110, Corriedale n = 108 and Creole n = 10) were genotyped using the Illumina Ovine SNP50 beadchip® . Genetic diversity was evaluated by comparing the minor allele frequency (MAF) among breeds. Population structure and genetic differentiation were assessed using STRUCTURE software, principal component analysis (PCA) and fixation index (FST). Fixed markers (MAF = 0) that were different among breeds were identified as specific breed markers. Using a subset of 18,181 single nucleotide polymorphisms (SNPs), PCA and STUCTURE analysis were able to explain population stratification within breeds. Merino and Corriedale divergent lines showed high levels of polymorphism (89.4% and 86% of polymorphic SNPs, respectively) and moderate genetic differentiation (FST = 0.08) between them. In contrast, Creole had only 69% polymorphic SNPs and showed greater genetic differentiation from the other two breeds (FST = 0.17 for both breeds). Hence, a subset of molecular markers present in the OvineSNP50 is informative enough for breed assignment and population structure analysis of commercial and Creole breeds. 650 $aDIVERSIDAD GENETICA 650 $aOVEJA 650 $aOVINOS 650 $aRAZAS (ANIMALES) 653 $aOVINE SNP50 700 1 $aGOLDBERG, V. 700 1 $aNAVAJAS, E. 700 1 $aIRIARTE, W. 700 1 $aGIMENO, D. 700 1 $aAGUILAR, I. 700 1 $aMEDRANO, J.F. 700 1 $aRINCÓN, G. 700 1 $aCIAPPESONI, G. 773 $tGenetics and Molecular Biology, 2014$gv.37, n.2, p.389-395.
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161. | | ROSAS, J.E.; ALE, L.; REBOLLO, I.; SCHEFFEL, S.; AGUILAR, I.; MOLINA, F.; PÉREZ DE VIDA, F. Boosting INIA's Rice Breeding Program with molecular quantitative genetics approaches. [Abstract]. In: International Temperate Rice Conference (7., 2020, Pelotas, RS), Science & Innovation: feeding a world of 10 billion people: proceedings. Pelotas RS, Brasil, February 9-12, 2020. Brasília, DF : Embrapa, 2020.Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Treinta y Tres. |
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162. | | BALMELLI, G.; SIMETO, S.; CASTILLO, A.; GASPARRI, P.; CABRERA, D.; AGUILAR, I.; QUEZADA, M.; DA SILVA, C.; GIORELLO, F. Breeding for resistance to Teratosphaeria nubilosa on Eucalyptus globulus. In: Pesquisa florestal brasileira = Brazilian journal of forestry research., v. 39, e201902043, Special issue, 2019. Colombo : Embrapa Florestas, 2019. Congreso IUFRO, 25., Curitiba, Brasil, 29 setiembre-05 octubre, 2019. Abstracts. p. 173Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Tacuarembó. |
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163. | | BRUNES, L.C.; FARIA, C.U.D.; MAGNABOSCO, C.U.; LOBO, R.B.; PERIPOLLI, E.; AGUILAR, I.; BALDI, F. Genomic prediction ability and genetic parameters for residual feed intake calculated using different approaches and their associations with growth, reproductive, and carcass traits in Nellore cattle. Journal of Applied Genetics, 2023, Volume 64, Issue 1, Pages 159 - 167. doi: https://doi.org/10.1007/s13353-022-00734-8 Article history: Received 25 February 2022; Revised 3 September 2022; Accepted 26 October 2022; Published online 15 November 2022; Published February 2023. -- Corresponding author: Brunes, L.C.; Animal Performance Center, Embrapa...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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164. | | GRASSO, A.; GOLDBERG, V.; NAVAJAS, E.; IRIARTE, W.; GIMENO, D.; AGUILAR, I.; MEDRANO, J.F.; RINCÓN, G.; CIAPPESONI, G. Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep. Genetics and Molecular Biology, 2014, v.37, n.2, p.389-395. Article history: Received: August 29, 2013 / Accepted: March 16, 2014.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : B - 1 |
Biblioteca(s): INIA Las Brujas. |
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166. | | CHEN, C. Y.; MISZTAL, I.; AGUILAR, I.; TSURUTA, S.; MEUWISSEN, T.; AGGREY, S. E.; MUIR, W. M. Genome wide marker assisted selection in chicken: making the most of all data, pedigree, phenotypic, and genomic in a simple one step procedure. Volume Genetic improvement programmes: Selection using molecular information - Lecture Sessions, 0288. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 9., Leipzig, Germany, August 1-6, 2010. p. 0288. Acknowledgements: The authors thank Cobb-Vantress for access to data for this study. This study was partially funded by the Holstein Association, Smithfield Premium Genetics, and by AFRI grants 2009-65205-05665 and 2010-65205-20366 from...Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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167. | | RODRÍGUEZ, J.D.; PERIPOLLI, E.; LONDOÑO-GIL, M.; ESPIGOLAN, R.; LÔBO, R. B.; LÓPEZ-CORREA, R.; AGUILAR, I.; BALDI, F. Effect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population. Research paper. Animal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581 Article history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez,
Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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168. | | MISZTAL, I.; FRAGOMENI, B.; LOURENÇO, D. A. L.; TSURUTA, S.; MASUDA, Y.; AGUILAR, I.; LEGARRA, A.; LAWLOR, T. J. Efficient inversion of genomic relationship matrix by the Algorithm for Proven and Young (APY). Interbull Bulletin, 2015, v. 49, p. 111-116.Tipo: Artículos Indexados |
Biblioteca(s): INIA Las Brujas. |
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169. | | MASUDA, Y.; MISZTAL, I.; TSURUTA, S.; LEGARRA, A.; AGUILAR, I.; LOURENCO, D.A.L.; FRAGOMENI, B.O.; LAWLOR, T.J. Implementation of genomic recursions in single-step genomic best linear unbiased predictor for US Holsteins with a large number of genotyped animals. Journal of Dairy Science, 2016, v.99, no.3, p.1968-1974. OPEN ACCESS OPEN ACCESS. Received 19 October 2015, Accepted 1 December 2015, Available online 21 January 2016Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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170. | | MCWHORTER, T.M.; BERMANN, M.; GARCIA, A.L.S.; LEGARRA, A.; AGUILAR, I.; MISZTAL, I.; LOURENCO, D. Implication of the order of blending and tuning when computing the genomic relationship matrix in single-step GBLUP. Journal of Animal Breeding and Genetics, 2023, volume 140, issue 1, pp. 60-78. OPEN ACCESS. doi: https://doi.org/10.1111/jbg.12734 Article history: Received 18 March 2019; Revised 15 July 2019; Accepted: 29 July 2019; First published 10 August 2022.
Correspondence: McWhorter, T.M.; Department of Animal and Dairy Science, University of Georgia, Athens, GA, United...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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171. | | NEGRI, R.; AGUILAR, I.; FELTES, G. L.; MACHADO, J. D.; NETO, J. B.; COSTA-MAIA, F. M.; COBUCI, J. A. Inclusion of bioclimatic variables in genetic evaluations of dairy cattle.[Open Access]. Animal Bioscience [Asian-Australasian Journal of Animal Sciences], Volume 34, Issue 2, February 2021, Pages 163-171. Doi: https://doi.org/10.5713/ajas.19.0960 Article history: Submitted Dec 16, 2019 / Revised Mar 27, 2020 / Accepted Apr 28, 2020.
Corresponding Author: rn.negri@yahoo.comTipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
Biblioteca(s): INIA Treinta y Tres. |
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172. | | RAVAGNOLO, O.; NAVAJAS, E.; AGUILAR, I.; CIAPPESONI, G.; LEMA, O.M.; MONTOSSI, F.; PERAZA, P.; DALLA RIZZA, M. Mejoramiento genético animal e importancia del banco de ADN. ln: INIA TACUAREMBÓ. UNIDAD DE BIOTECNOLOGÍA INIA. Jornada técnica. Jornada de Agrobiotecnología INIA, 15 NOVIEMBRE, Tacuarembó, Biotecnología para el sector productivo: situación actual y perspectivas. Tacuarembó (Uruguay): INIA, 2012. p. 4-7 (INIA Serie Actividades de Difusión; 702)Tipo: Actividades de Difusión |
Biblioteca(s): INIA Tacuarembó. |
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173. | | LOURENCO, D.A.L.; MISZTAL, I.; TSURUTA, S.; AGUILAR, I.; EZRA, E.; RON, M.; SHIRAK, A.; WELLER, J.I. Methods for genomic evaluation of a relatively small genotyped dairy population and effect of genotyped cow information in multiparity analyses. Journal of Dairy Science, 2014, v.97, no.3, p.1742-1752. OPEN ACCESS. Article history: Received September 10, 2013. / Accepted December 6, 2013.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
Biblioteca(s): INIA Las Brujas. |
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174. | | FRAGOMENI, B.O.; LOURENCO, D.A.L.; TSURUTA, S.; MASUDA, Y.; AGUILAR, I.; LEGARRA, A.; LAWLOR, T.J.; MIZTAL, I. Hot topic: Use of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) with a large number of genotypes. Journal of Dairy Science, 2015, v.98, no.6, p.4090-4094. OPEN ACCESS. Article history: Received November 18, 2014 / Accepted March 13, 2015 / Published online: April 8, 2015.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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175. | | LOURENCO, D.; TSURUTA, S.; FRAGOMENI, B.; MASUDA, Y.; AGUILAR, I.; LEGARRA, A.; MILLER, S.; MOSER, D.; MISZTAL, I. Single-step genomic BLUP for national beef cattle evaluation in US: from initial developments to final implementation. Volume Species - Bovine (beef) 1, 495. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 11., Aotea Centre Auckland, New Zealand: WCGALP, ICAR, 11-16 feb 2018.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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176. | | MASUDA, Y.; MISZTAL, I.; TSURUTA, S.; LOURENÇO, D. A. L.; FRAGOMENI, B.; LEGARRA, A.; AGUILAR, I.; LAWLOR, T. J. Single-step genomic evaluations with 570K genotyped animals in US Holsteins. Interbull Bulletin, 2015, v. 49, p. 85-89.Tipo: Artículos Indexados |
Biblioteca(s): INIA Las Brujas. |
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177. | | FORNERIS, N. S.; LEGARRA, A.; VITEZICA, Z. G.; TSURUTA, S.; AGUILAR, I.; MISZTAL, I.; CANTET, R. J. C. Quality control of genotypes using heritability estimates of gene content at the marker. Genetics, 2015, v. 199, p. 675-681. OPEN ACCESS. Manuscript received September 26, 2014; accepted for publication December 18, 2014; published Early Online January 6, 2015.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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178. | | FORNERIS, N. S.; LEGARRA, A.; VITEZICA, Z. G.; TSURUTA, S.; AGUILAR, I.; CANTET, R.J.C.; MISZTAL, I. Quality control of genotypes using heritability estimates of gene content. Volume Genetic Improvement Programs: Selection using molecular information (Posters), 471. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.471.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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179. | | Aguilar, I.; Pravia, M.I.; Ravagnolo, O.; Chiappesoni, G.; Mattos, M.; Ahlig, I.; Urioste, J.; Naya, H. Servicio de evaluación de reproductores Aberdeen Angus Las Brujas, Canelones (Uruguay): INIA, 2004. 23 pBiblioteca(s): INIA La Estanzuela. |
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180. | | LONDOÑO-GIL, M.; LÓPEZ-CORREA, R.; AGUILAR, I.; MAGNABOSCO, C.U.; HIDALGO, J.; BUSSIMAN, F.; BALDI, F.; LOURENCO, D. Strategies for genomic predictions of an indicine multi-breed population using single-step GBLUP. Journal of Animal Breeding and Genetics, 2024. https://doi.org/10.1111/jbg.12882 - [Early view] Article history: Received 22 March 2024, Revised 10 May 2024, Accepted 15 May 2024. -- Corresponding author: Londoño-Gil, M.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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Registros recuperados : 218 | |
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