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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
27/07/2022 |
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Actualizado : |
27/02/2023 |
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Tipo de producción científica : |
Trabajos en Congresos/Conferencias |
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Autor : |
LOURENCO, D.; TSURUTA, S.; AGUILAR, I.; MASUDA, Y.; BERMANN, M.; LEGARRA, A.; MISZTAL, I. |
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Afiliación : |
D. LOURENCO, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; S. TSURUTA, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Y. MASUDA, Rakuno Gakuen University, 069-8501, Ebetsu, Hokkaido, Japan; M. BERMANN, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; A. LEGARRA, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, UMR1388 GenPhySE, 31326, Castanet Tolosan, France; I. MISZTAL, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA. |
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Título : |
Recent updates in the BLUPF90 software suite. [366]. |
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Complemento del título : |
Part 19 - Methods and tools: software and computing strategies. |
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Fecha de publicación : |
2022 |
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Fuente / Imprenta : |
In: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), 12., Rotterdam, the Netherlands, 3-8 July 2022. doi: https://doi.org/10.3920/978-90-8686-940-4_366 |
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Páginas : |
1530-1533. |
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DOI : |
10.3920/978-90-8686-940-4_366 |
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Idioma : |
Inglés |
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Notas : |
Article history: Published online: February 9, 2023. -- Corresponding author: D. Lourenco, email: danilino@uga.edu |
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Contenido : |
ABSTRACT.- BLUPF90 is a flexible software suite that estimates variance components, cross-classified and covariate effects, breeding values, accuracies, and SNP effects, among others. It is based on mixed models and focuses mainly on animal breeding and genetics applications. This collection of software is continually under development to incorporate new methods and algorithms, improve efficiency, and broaden usage. A significant change undergoing BLUPF90 is the merge of variance components and breeding values estimation software. Some of the recent developments include the implementation of p-values for SNP effects in single-step GWAS, a new algorithm to approximate reliability or accuracy of GEBV, the inclusion of metafounders or unknown parent groups in ssGBLUP to set the base populations, and several optimizations to speed up computing time with many genotyped animals. BLUPF90 is a resourceful collection of efficient software that handles millions of genotyped animals and dozens of millions of records or individuals in pedigree. |
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Palabras claves : |
BLUP program; BLUPF90 software. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16999/1/978-90-8686-940-4-366.pdf
https://www.wageningenacademic.com/doi/epdf/10.3920/978-90-8686-940-4_366
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Marc : |
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500 $aArticle history: Published online: February 9, 2023. -- Corresponding author: D. Lourenco, email: danilino@uga.edu
520 $aABSTRACT.- BLUPF90 is a flexible software suite that estimates variance components, cross-classified and covariate effects, breeding values, accuracies, and SNP effects, among others. It is based on mixed models and focuses mainly on animal breeding and genetics applications. This collection of software is continually under development to incorporate new methods and algorithms, improve efficiency, and broaden usage. A significant change undergoing BLUPF90 is the merge of variance components and breeding values estimation software. Some of the recent developments include the implementation of p-values for SNP effects in single-step GWAS, a new algorithm to approximate reliability or accuracy of GEBV, the inclusion of metafounders or unknown parent groups in ssGBLUP to set the base populations, and several optimizations to speed up computing time with many genotyped animals. BLUPF90 is a resourceful collection of efficient software that handles millions of genotyped animals and dozens of millions of records or individuals in pedigree.
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700 1 $aBERMANN, M.
700 1 $aLEGARRA, A.
700 1 $aMISZTAL, I.
Descargar
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Registro original : |
INIA Las Brujas (LB) |
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| Registros recuperados : 218 | |
| 141. |  | LOURENCO, D.; LEGARRA, A.; TSURUTA, S.; MASUDA, Y.; AGUILAR, I.; MISZTAL, I. Single-step genomic evaluations from theory to practice: using snp chips and sequence data in blupf90. Genes, July 2020. Volume 11, Issue 7, Article number 790, Pages 1-32. Open Access. Doi: https://doi.org/10.3390/genes11070790 Article history: Received: 19 June 2020 / Revised: 3 July 2020 / Accepted: 6 July 2020 / Published: 14 July 2020.
(This article belongs to the Special Issue Genomic Prediction Methods for Sequencing Data):...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 142. | | CIAPPESONI, G.; NAVAJAS, E.; BAPTISTA, R.; AGUILAR, I.; PERAZA, P.; CARRACELAS, B.; DE BARBIERI, I. Proyecto SMARTER. INIA ya está en el Mundial de la Genética Ovina. Producción Animal. Revista INIA Uruguay, Marzo 2022, no.68, p.15-18. (Revista INIA; 68).| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Las Brujas. |
|  |
| 143. | | LOURENCO, D.; TSURUTA, S.; AGUILAR, I.; MASUDA, Y.; BERMANN, M.; LEGARRA, A.; MISZTAL, I. Recent updates in the BLUPF90 software suite. [366]. Part 19 - Methods and tools: software and computing strategies. In: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), 12., Rotterdam, the Netherlands, 3-8 July 2022. doi: https://doi.org/10.3920/978-90-8686-940-4_366 1530-1533. Article history: Published online: February 9, 2023. -- Corresponding author: D. Lourenco, email: danilino@uga.edu| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 145. | | LOURENCO, D.A.L.; MISZTAL, I.; WANG, H.; AGUILAR, I.; TSURUTA, S.; BERTRAND, J.K. Prediction accuracy for a simulated maternally affected trait of beef cattle using different genomic evaluation models. Journal of Animal Science, 2013, v.91, no.9, p.4090-4098. Article history: Published online July 26, 2013.
This study was partially funded by the American Angus Association (St. Joseph, MO) and the USDA Agriculture and Food Research Initiative (Grant no. 2009-65205-05665 from the USDA National...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 2 |
| Biblioteca(s): INIA Las Brujas. |
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| 146. | | NAVAJAS, E.; RAVAGNOLO, O.; AGUILAR, I.; CIAPPESONI, G.; PERAZA, P.; DALLA RIZZA, M.; MONTOSSI, F. Selección genómica animal: quién, cómo y dónde. ln: INIA TACUAREMBÓ. UNIDAD DE BIOTECNOLOGÍA INIA. Jornada técnica. Jornada de Agrobiotecnología INIA, 15 NOVIEMBRE, Tacuarembó, Biotecnología para el sector productivo: situación actual y perspectivas. Tacuarembó (Uruguay): INIA, 2012. p. 17-19 (INIA Serie Actividades de Difusión; 702) INIA Tacuarembó| Biblioteca(s): INIA Tacuarembó. |
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| 147. | | MISZTAL, I.; AGUILAR, I.; TSURUTA, S.; SÁNCHEZ, J.P.; ZUMBACH, B. Studies on heat stress in dairy cattle and pigs. Volume Special topics: Animal breeding and the environmental challenges - Lecture Sessions, 0625. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 9., Leipzig, Germany, August 1-6, 2010. p. 0625.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 148. | | GARCÍA, A.; AGUILAR, I.; LEGARRA, A.; TSURUTA, S.; MISZTAL, I.; LOURENCO, D. Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP. Genetics, Selection, Evolution : GSE, 2022, Volume 54, Issue 1, Pages 66. OPEN ACCESS. doi: https://doi.org/10.1186/s12711-022-00752-4 Article history: Received 22 March 2022; Accepted 23 August 2022; Published 27 September 2022.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - 1 |
| Biblioteca(s): INIA Las Brujas. |
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| 149. | | MISZTAL, I.; AGUILAR, I.; LEGARRA, A.; JOHNSON, D.; TSURUTA, S.; LAWLOR, T. J. A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation. Volume Methods and tools: Software and bioinformatics - Lecture Sessions, 0050. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 9., Leipzig, Germany, August 1-6, 2010. p. 0050. Acknowledgements: This study was partially funded by the Holstein Association, Smithfield Premium Genetics, and AFRI grants 2009-65205-05665 and 2010-65205-20366 from the USDA NIFA Animal Genome Program.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 151. | | FRAGOMENI, B.O.; LOURENCO, D.A.L.; TSURUTA, S.; MASUDA, Y.; AGUILAR, I.; MISZTAL, I. Use of genomic recursions and algorithm for proven and young animals for single-step genomic BLUP analyses - a simulation study. Journal of Animal Breeding and Genetics, 2015, v.132, no.5, p. 340-345.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 152. | | AGUILAR, I.; MISZTAL, I.; JOHNSON, D. L.; LEGARRA, A.; TSURUTA, S.; LAWLOR, T. J. Uso de información genómica en evaluaciones genéticas. Agrociencia Uruguay, 2010, v. 14, no. 3, p. 43-47. Agrociencia, Nro especial: Congreso Asociación Uruguaya de Producción Animal, 3., 4-5 Noviembre 2010, Montevideo, UY: INIA, Facultad de Agronomía, SMVU.| Tipo: Artículos en Revistas Indexadas Nacionales | Circulación / Nivel : B - 5 |
| Biblioteca(s): INIA Las Brujas. |
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| 153. | | MOTTA, R. R.; SILVA, F. F.; LOPES, P. S.; TEMPELMAN, R. J.; SOLLERO, B. P.; AGUILAR, I.; CARDOSO, F. F. Analyses of reaction norms reveal new chromosome regions associated with tick resistance in cattle. Animal, 2018, volume 12, Issue 2, pages 205-214. OPEN ACCESS. doi: https://doi.org/10.1017/S1751731117001562 Article history: Received 12 December 2016; Accepted 22 May 2017; Published online: 13 July 2017.
Corresponding author: R.R. Mota, Gembloux Agro-Bio Tech Faculty, TERRA Teaching and Research Centre, University of Liège, B-5030 Gembloux,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 154. | | LEMA, O.M.; BRITO, G.; CLARIGET, J.; PEREZ, E.; LA MANNA, A.; RAVAGNOLO, O.; AGUILAR, I.; MONTOSSI, F. Dos años de evaluación de ganancia diaria invernal de terneros con paternidad conocida sobre la recría y terminación.[Presentación oral]. In: CONGRESO ARGENTINO DE PRODUCCIÓN ANIMAL, 38., 2015. Resúmenes. Santa Rosa, La Pampa, AR: ASAS/AAPA, 2015| Tipo: Presentaciones Orales |
| Biblioteca(s): INIA Treinta y Tres. |
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| 155. | | LOURENCO, D.A.L.; MISZTAL, I.; TSURUTA, S.; AGUILAR, I.; LAWLOR, T.J.; FORNI, S.; WELLER, J.I. Are evaluations on young genotyped animals benefiting from the past generations?. Journal of Dairy Science, 2014, v.97, no.6, p.3930-3942. OPEN ACCESS Article history: Received November 26, 2013. // Accepted February 11, 2014. OPEN ACCESS| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
| Biblioteca(s): INIA Las Brujas. |
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| 156. | | LOURENCO, D.A.L.; FRAGOMENI, B.O.; TSURUTA, S.; AGUILAR, I.; ZUMBACH, B.; HAWKEN, R.J.; LEGARRA, A.; MISZTAL, I. Accuracy of estimated breeding values with genomic information on males, females, or both: An example on broiler chicken. Genetics Selection Evolution, 2015, v. 242, p. 47-56. OPEN ACCESS. Article history: Received: 14 October 2014 / Accepted: 22 June 2015 / Published: 02 July 2015.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 157. | | RAVAGNOLO, O.; AGUILAR, I.; CROWLEY, J. J.; PRAVIA, M.I.; LEMA, O.M.; MACEDO, F.; SCOTT, S.; NAVAJAS, E. Accuracy of genomic predictions of residual feed intake in Hereford with Uruguayan and Canadian training populations. Volume: Electronic Poster Session - Species - Bovine (beef) 1, p. 723. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 11., Aotea Centre Auckland, New Zealand: WCGALP, ICAR, 11-16 feb 2018. 6 p.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 158. | | LEMA, O.M.; BRITO, G.; CLARIGET, J.; PEREZ, E.; LA MANNA, A.; RAVAGNOLO, O.; AGUILAR, I.; MONTOSSI, F. Can nutritional level and parental EPD for rib eye area influence feed conversion efficiency and carcass yield in steers?.[Poster]. In: AUSTRALIAN SOCIETY OF ANIMAL PRODUCTION; NEW ZEALAND SOCIETY OF ANIMAL PRODUCTION, 31st,2016. Proceedings. Adelaida, South Australia, AU: ASAP. 2016.| Biblioteca(s): INIA La Estanzuela. |
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| 159. | | NAVAJAS, E.; PERAZA, P.; RAVAGNOLO, O.; CIAPPESONI, G.; AGUILAR, I.; KELLY, L.; BRANDA, A.; DALLA RIZZA, M.; MONTOSSI, F. Banco de ADN genómico animal: pilar de una plataforma en selección genómica. Revista INIA Uruguay, 2012, no. 28, p. 20-24 (Revista INIA; 28)| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Las Brujas. |
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| 160. | | CARRACELAS, B.; PERAZA, P.; VERGARA, A.; CIAPPESONI, G.; RAVAGNOLO, O.; AGUILAR, I.; LEMA, O.M.; NAVAJAS, E. Banco de ADN genómico animal - plataforma de evaluación genómica. Revista INIA Uruguay, Diciembre 2022, no.71, p. 38-42. (Revista INIA; 71)| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 218 | |
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