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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha : |
30/11/2020 |
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Actualizado : |
05/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
WANG, X.; SILVA, P.; BELLO, N.M.; SINGH, D.; EVERS, B.; SINGH, R.P.; POLAND, J. |
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Afiliación : |
XU WANG, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.;Department of Plant Pathology, Kansas State University, Manhattan, KS, United States; Interdepartmental Genetics, Kansas State University, Manhattan, KS, United State; NORA M. BELLO, Department of Statistics, Kansas State University, Manhattan, KS, United States,; DALJIT SINGH, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; BYRON EVERS, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; RAVI P. SINGH, Global Wheat Program, International Maize and Wheat Improvement Center, Mexico City, Mexico.; JESSE POLAND1, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States. |
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Título : |
Improved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Frontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093 |
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DOI : |
10.3389/fpls.2020.587093 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020. |
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Contenido : |
The development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection. MenosThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-s... Presentar Todo |
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Palabras claves : |
CANOPY TEMPERATURE; GROUND COVER; HIGH-THROUGHPUT PHENOTYPING; NORMALIZED DIFFERENCE VEGETATION INDEX; UNMANNED AERIAL SYSTEMS; WHEAT. |
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Thesagro : |
TRIGO. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16703/1/fpls-11-587093.pdf
https://www.frontiersin.org/articles/10.3389/fpls.2020.587093/pdf
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Marc : |
LEADER 03406nam a2200289 a 4500
001 1061531
005 2022-09-05
008 2020 bl uuuu u0uu1 u #d
024 7 $a10.3389/fpls.2020.587093$2DOI
100 1 $aWANG, X.
245 $aImproved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images.$h[electronic resource]
260 $aFrontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093$c2020
500 $aArticle history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020.
520 $aThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection.
650 $aTRIGO
653 $aCANOPY TEMPERATURE
653 $aGROUND COVER
653 $aHIGH-THROUGHPUT PHENOTYPING
653 $aNORMALIZED DIFFERENCE VEGETATION INDEX
653 $aUNMANNED AERIAL SYSTEMS
653 $aWHEAT
700 1 $aSILVA, P.
700 1 $aBELLO, N.M.
700 1 $aSINGH, D.
700 1 $aEVERS, B.
700 1 $aSINGH, R.P.
700 1 $aPOLAND, J.
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Registro original : |
INIA La Estanzuela (LE) |
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| 82. |  | ALGORTA, G. Las casuarinas: un género útil con poca mejora. ln: INIA TACUAREMBÓ. JORNADA TÉCNICA, 24 OCTUBRE, SALTO, URUGUAY. Diversificación de especies forestales en zona litoral. Tacuarembó (Uruguay): INIA, 2012. p. 41-47 (INIA Serie Actividades de Difusión ; 697)| Biblioteca(s): INIA Tacuarembó. |
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| 83. | | BENNADJI, Z.; CARRAU, F.; ALFONSO, M.; RICHARD, M.; NUÑEZ, P.; RODRÍGUEZ, W.; AQUINO, D. Etapas de instalación y de seguimiento de los ensayos de diversificación de especies forestales (pecan y algarrobo) en zona litoral. ln: INIA TACUAREMBÓ. JORNADA TÉCNICA, 24 OCTUBRE, SALTO, URUGUAY. Diversificación de especies forestales en zona litoral. Tacuarembó (Uruguay): INIA, 2012. p. 23-31 (INIA Serie Actividades de Difusión ; 697)| Biblioteca(s): INIA Tacuarembó. |
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| 84. | | BENNADJI, Z. Introducción: objetivos del seminario. ln: INIA TACUAREMBÓ. PROGRAMA NACIONAL DE INVESTIGACIÓN PRODUCCIÓN FORESTAL. SEMINARIO DE ACTUALIZACIÓN TÉCNICA, 2., 27 DE OCTUBRE DE 2011, TACUAREMBÓ. Diversificación de especies y forestación a pequeña escala. Tacuarembó (Uruguay): INIA , 2011. p. 1-2 (INIA Serie Actividades de Difusión; 661)| Biblioteca(s): INIA Tacuarembó. |
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| 86. | | GÓMEZ, D.; SUAREZ, M.; MARTÍNEZ, G. Amasa truncata (Erichson) (Coleoptera: Curculionidae: Scolytinae): A New Exotic Ambrosia Beetle in Uruguay. The Coleopterists Bulletin, 2017, v. 71, no. 4, p. 825-826. Article history: Received: July 19, 2017// Accepted: October 20, 2017// Published: December 22, 2017.| Biblioteca(s): INIA Tacuarembó. |
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| 92. | | JORGE, C.; GOMEZ, D.; MARTÍNEZ, G.; REYNA, R. Advances in the knowledge of Eucalyptus gall insects in Uruguay: current status and future prospects. IUFRO WORLD CONGRESS, 24., Sustaining Forests, Sustaining People: The Role of Research, 5-11 October 2014, Salt Lake City, USA. Abstracts, v. 16(5), 2014. p. 484| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Tacuarembó. |
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| 93. | | WALLACE, F.; DE SOUZA, G.; BENNADJI, Z.; FERREIRA, F.; OLIVARO, C. Caracterización estructural de una fracción inmunoadyuvante de saponinas de Quillaja brasiliensis por espectrometría de masas en tándem (DI-ESI-IT-MSn y LC-ESI-IT-MSn) [Resumen de Presentación oral]. In: Encuentro Nacional de Química (ENAQUI), 6., 16-18 octubre, Montevideo, Uruguay, 2019.| Tipo: Abstracts/Resúmenes |
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| 94. | | RAMÍREZ, N.; SIMETO, S.; BALMELLI, G.; BENTANCUR, O.; WINGFIELD, M.; PÉREZ, C.A. Caracterización de la población de Teratosphaeria pseudoeucalypti y evaluación de resistencia genética en germoplasmas de interés para el sector agroforestal de Uruguay. [Presentación oral]. In: Jornadas Argentinas, 3., Binacionales de Sanidad Forestal, 1., Universidad Nacional de Luján, 10 de Agosto, 2017| Tipo: Presentaciones Orales |
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| 96. | | GONZALEZ, A.; CALVO, M.V.; SELLANES, C.; MARTÍNEZ, G. Avances en el estudio de feromonas en la chinche del eucalipto, Thaumastocoris peregrinus: agregación de machos mediada por feromonas volátiles In: BALMELLI, G.; SIMETO, S.; MARTÍNEZ, G.; GÓMEZ, D. (Eds.). V Jornada técnica de protección forestal. Avances de investigación en plagas y enfermedades forestales Montevideo (UY): INIA, 2013. p. 9-14 (INIA Serie Técnica; 209)| Tipo: Capítulo en Libro Técnico-Científico |
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| 97. | | FERREIRA, G.; BENNADJI, Z.; AYALA, W.; PITTALUGA, O.; BALMELLI, G.; BEMHAJA, M.; JAURENA, M.; VIÑOLES, C.; RODRÍGUEZ, A.; OLMOS, F.; PÉREZ GOMAR, E.; ZERBINO, M.; BLUMETTO, O.; CASTAÑO, J.; GUTIÉRREZ, F.; GIORELLO, D.; GALLO, L.; PITTALUGA, L.; MILA, J.; POSSE, J.; IVANCHENKO, J. Avances y propuestas de investigación en sistemas agro forestales: 2007-2011. [Presentación oral]. In: Jornada de difuisón: Instalación de cuencas experimentales para el estudio de los efectos del establecimiento de áreas forestadas con Pino en el Uruguay, 10 de mayo, INIA Tacuarembó. Montevideo: INIA, 2007.| Tipo: Presentaciones Orales |
| Biblioteca(s): INIA Tacuarembó. |
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| Registros recuperados : 478 | |
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