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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
Fecha : |
30/11/2020 |
Actualizado : |
05/09/2022 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
WANG, X.; SILVA, P.; BELLO, N.M.; SINGH, D.; EVERS, B.; SINGH, R.P.; POLAND, J. |
Afiliación : |
XU WANG, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.;Department of Plant Pathology, Kansas State University, Manhattan, KS, United States; Interdepartmental Genetics, Kansas State University, Manhattan, KS, United State; NORA M. BELLO, Department of Statistics, Kansas State University, Manhattan, KS, United States,; DALJIT SINGH, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; BYRON EVERS, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; RAVI P. SINGH, Global Wheat Program, International Maize and Wheat Improvement Center, Mexico City, Mexico.; JESSE POLAND1, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States. |
Título : |
Improved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images. |
Fecha de publicación : |
2020 |
Fuente / Imprenta : |
Frontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093 |
DOI : |
10.3389/fpls.2020.587093 |
Idioma : |
Inglés |
Notas : |
Article history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020. |
Contenido : |
The development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection. MenosThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-s... Presentar Todo |
Palabras claves : |
CANOPY TEMPERATURE; GROUND COVER; HIGH-THROUGHPUT PHENOTYPING; NORMALIZED DIFFERENCE VEGETATION INDEX; UNMANNED AERIAL SYSTEMS; WHEAT. |
Thesagro : |
TRIGO. |
Asunto categoría : |
-- |
URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16703/1/fpls-11-587093.pdf
https://www.frontiersin.org/articles/10.3389/fpls.2020.587093/pdf
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Marc : |
LEADER 03406nam a2200289 a 4500 001 1061531 005 2022-09-05 008 2020 bl uuuu u0uu1 u #d 024 7 $a10.3389/fpls.2020.587093$2DOI 100 1 $aWANG, X. 245 $aImproved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images.$h[electronic resource] 260 $aFrontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093$c2020 500 $aArticle history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020. 520 $aThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection. 650 $aTRIGO 653 $aCANOPY TEMPERATURE 653 $aGROUND COVER 653 $aHIGH-THROUGHPUT PHENOTYPING 653 $aNORMALIZED DIFFERENCE VEGETATION INDEX 653 $aUNMANNED AERIAL SYSTEMS 653 $aWHEAT 700 1 $aSILVA, P. 700 1 $aBELLO, N.M. 700 1 $aSINGH, D. 700 1 $aEVERS, B. 700 1 $aSINGH, R.P. 700 1 $aPOLAND, J.
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INIA La Estanzuela (LE) |
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21. | | GERMAN, S.; PEREYRA, S.; DIAZ DE ACKERMANN, M.; SILVA, P.; QUINCKE, M.; VÁZQUEZ, D. Mejoramiento por resistencia a enfermedades de trigo en Uruguay.[Presentación oral]. In: SEMINARIO INTERNACIONAL DE TRIGO, 2014, La Estanzuela, Colonia, UY. GERMÁN, S., et al. (Org.). 1914-2014, un siglo de mejoramiento de trigo en La Estanzuela: un valioso legado para el futuro: presentaciones; resúmenes. La Estanzuela, Colonia, UY: INIA, 2014. p. 45.Tipo: Presentaciones Orales |
Biblioteca(s): INIA La Estanzuela. |
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24. | | RIELLA, V.; RODRIGUEZ-ALGABA, J.; GARCIA, R.; PEREIRA, F.; SILVA, P.; HOVMOLLER, M.S.; GERMAN, S. P7. Evolución de la virulencia de la población de Puccinia striiformis f. sp. tritici en Uruguay. [Poster]. Posters. In: Sociedad Uruguaya de Fitopatología (SUFIT). Jornada Uruguaya de Fitopatología, 7., Jornada Uruguaya de Protección Vegetal, 5., 10 noviembre 2023, Montevideo, Uruguay. Libro de resúmenes. 30 años SUFIT, 1993-2023. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2023. p. 34. Financiamiento: Agencia Nacional de Investigación e Innovación de Uruguay (ANII), Convocatoria INNOVAGRO, proyecto FSA_1_2018_1_152918. -- Autor correspondencia: e-mail: vriella@fagro.edu.uyTipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Las Brujas. |
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26. | | LADO, B.; VÁZQUEZ, D.; QUINCKE, M.; SILVA, P.; AGUILAR, I.; GUTIÉRREZ, L. Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality. [Original article]. Theoretical and Applied Genetics, 1 December 2018, Volume 131, Issue 12, pp. 2719-2731. OPEN ACCESS. Article history: Received: 29 January 2018 / Accepted: 10 September 2018 / Published online: 19 September 2018.
Supplementary materials.
Acknowledgements: We express our appreciation for the effort of the technical personnel of INIA La...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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27. | | GERMAN, S.; QUINCKE, M.; VÁZQUEZ, D.; CASTRO, M.; PEREYRA, S.; SILVA, P.; GARCIA, A. (Ed.). Seminario Internacional "1914-2014: Un siglo de mejoramiento de trigo en La Estanzuela." INIA La Estanzuela, 27-28-29 de agosto de 2014. Montevideo (UY): INIA, 2018. 307 p. (INIA Serie Técnica; 241) Editores y Comité Organizador: Silvia Germán, Martín Quincke, Daniel Vázquez, Marina Castro, Silvia Pereyra, Paula Silva, Adriana García.Biblioteca(s): INIA La Estanzuela; INIA Las Brujas. |
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30. | | SILVA, P.; TORRES-PUYO, C.; RODRÍGUEZ, S.; PEREYRA, S.; GAMBA, F.; PRITSCH, C. Variabilidad patogénica, diversidad genética y estructura poblacional de Cochliobulus sativus (anamorfo Bipolaris sorokiniana) en Uruguay. In: JORNADA BIANUAL DE FITOPATOLOGÍA, 2., 2012, Montevideo, UY. Impacto de la intensificación de los cultivos en el desarrollo de las enfermedades. Montevideo: SUFIT, 2012. p. 14.Tipo: Presentaciones Orales |
Biblioteca(s): INIA La Estanzuela. |
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31. | | SILVA, P.; EVERS, B.; KIEFFABER, A.; WANG, X.; BROWN, R.; GAO, L.; FRITZ, A.; CRAIN, J.; POLAND, J. Applied phenomics and genomics for improving barley yellow dwarf resistance in winter wheat. G3 Genes| Genomes| Genetics, (Bethesda, Md.), 2022;, jkac064, Open Access. DOI:https://doi.org/10.1093/g3journal/jkac064 Article history: Received: 22 December 2021/Accepted: 12 March 2022/Published: 30 March 2022.
The Author(s) (2022) . Published by Oxford University Press on behalf of the Genetics Society of America. This is an Open Access article...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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32. | | SILVA, P.; LADO, B.; BRANDARIZ, S.; PEREYRA, S.; GERMAN, S.; VON ZITZEWITZ, J.; GUTIÉRREZ, L.; QUINCKE, M. Herramientas utilizadas y avances en mejoramiento molecular en el Programa de Mejoramiento Genético de Trigo de INIA Uruguay.[Presentación oral]. In: SEMINARIO INTERNACIONAL DE TRIGO, 2014, La Estanzuela, Colonia, UY. GERMÁN, S., et al. (Org.). 1914-2014, un siglo de mejoramiento de trigo en La Estanzuela: un valioso legado para el futuro: presentaciones; resúmenes. La Estanzuela, Colonia, UY: INIA, 2014. p. 81.Tipo: Presentaciones Orales |
Biblioteca(s): INIA La Estanzuela. |
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33. | | SILVA, P.; LADO, B.; BRANDARIZ, S.; BERRO, I.; GUTIÉRREZ, L.; PEREYRA, S.; GERMAN, S.; VON ZITZEWITZ, J.; QUINCKE, M. Herramientas utilizadas y avances en mejoramiento molecular en el programa de mejoramiento genético de trigo de Inia Uruguay. In: German, S.; Quincke, M.; Vázquez, D.; Castro, M.; Pereyra, S.; Silva, P.; García, A. (Eds.). Seminario Internacional "1914-2014: Un siglo de mejoramiento de trigo en La Estanzuela". Montevideo (UY): INIA, 2018. p. 277-285. (INIA Serie Técnica; 241).Tipo: Capítulo en Libro Técnico-Científico |
Biblioteca(s): INIA La Estanzuela. |
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34. | | PÉREZ, O.; CAPURRO, M.C.; FASSIO, A.; SAWCHIK, J.; CLARIGET, J.; SCHUSSELIN, J.; SILVA, P.; MORALES, M. Producción y calidad de diferentes tipos de sorgo regados y pastoreados con novillos. In: Día de Campo Manejo de Cultivos de Verano en Secano y Bajo Riego (2014, INIA La Estanzuela, Uruguay). (Serie Actividades de Difusión; 729)Biblioteca(s): INIA La Estanzuela. |
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35. | | STIGGER, A. L.; ESTIMA-SILVA, P.; COELHO, A. C. B.; SANTOS, B. L.; MARCOLONGO-PEREIRA, C.; RIET-CORREA, F.; BRUHN, F. R. P.; SCHILD, A. L. Controle de Senecio madagascariensis e de Senecio brasiliensis pela utilização de pastejo com ovinos. (Control of Senecio madagascariensis and Senecio brasiliensis by the use of sheep.). Pesquisa Veterinária Brasileira, Rio de Janeiro v. 38, n. 1, p. 29-36, janeiro 2018. Article History: Recebido 9 de janeiro de 2017.// Aceito para publicação 31 de março de 2017.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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36. | | LADO, B.; BATTENFIELD, S.; SILVA, P.; QUINCKE, M.; GUZMAN, C.; SINGH, R.P.; DREISIGACKER, S.; PEÑA, J.; FRITZ, A.; POLAND, J.; GUTIERREZ, L. Comparing strategies to select crosses using genomic prediction in two wheat breeding programs. In: International Wheat Genetics Symposium, 12, Tulln, Austria; April 23-28, 2017; BOKU: University of Natural Resources and Life Sciences, Vienna, Austria. p.88-90.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA La Estanzuela. |
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37. | | QUEZADA, M.; PASTINA, M.M.; RAVEST, G.; SILVA, P.; VIGNALE, B.; CABRERA, D.; HINRICHSEN, P.; GARCÍA, A.A.F.; PRITSCH, C. A first genetic map of Acca sellowiana based on ISSR, AFLP and SSR markers. Scientia Horticulturae, 2014, v.169, no.2, p. 138-146. Article history: Received 13 May 2013 / Received in revised form 24 January 2014 / Accepted 12 February 2014 / Available online 14 March 2014.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 2 |
Biblioteca(s): INIA Las Brujas. |
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38. | | CRUPPE, G.; SILVA, P.; SILVA, C. LEMES DA; PETERSON, G.; PEDLEY, K. F.; CRUZ, C. D.; ASIF, M.; LOLLATO, R. P.; FRITZ, A. K.; VALENT, B. Genome wide association reveals limited benefits of pyramiding the 1B and 1D loci with the 2Nv S translocation for wheat blast control. Crop Science [First Online]. DOI: https://doi.org/10.1002/csc2.20397 42 p. Article history: Manuscript received, 09 June 2020 // Manuscript accepted, 23 October 2020 // Accepted manuscript online, 31 October 2020 // Version of Record online,
22 December 2020.
Corresponding authors: Barbara Valent,...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
Biblioteca(s): INIA Treinta y Tres. |
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39. | | SILVA, P.; CALVO-SALAZAR, V.; CONDON, F.; QUINCKE, M.; PRITSCH, C.; GUTIÉRREZ, L.; CASTRO, A.; HERRERA-FOESSEL, S.; VON ZITZEWITZ, J.; GERMAN, S. Effects and interactions of genes Lr34, Lr68 and Sr2 on wheat leaf rust adult plant resistance in Uruguay Euphytica, 2015, v. 204, p. 599?608.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela; INIA Las Brujas. |
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40. | | RAFFO, M.A.; AZZIMONTI, G.; PEREYRA, S.; PRITSCH, C.; LADO, B.; DREISIGACKER, S.; QUINCKE, M.; CASTRO, A.; SILVA, P.; GARCIA, R.; PEREIRA, F.; GERMAN, S. Introgression of the coupled Fhb1-Sr2 to increase Fusarium head blight and stem rust resistance of elite wheat cultivars. Plant Genetic Resources: Characterization and Utilization, 1-10, 2022. Doi: https://doi.org/10.1017/S1479262122000107 Article history: Received: 1 June 2021/Revised: 20 April 2022/Accepted: 20 April 2022. Author for correspondence: S. Germán, E-mail: sgerman@inia.org.uy. The supplementary material for this article can be found at...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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Registros recuperados : 53 | |
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