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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
21/02/2014 |
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Actualizado : |
23/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
TSURUTA, S.; MISZTAL, I.; AGUILAR, I.; LAWLOR, T.J. |
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Afiliación : |
IGNACIO AGUILAR GARCIA, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay. |
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Título : |
Multiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins. |
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Fecha de publicación : |
2011 |
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Fuente / Imprenta : |
Journal of Dairy Science, 2011, v.94, no.8, p.4198-4204. OPEN ACCESS. |
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ISSN : |
0022-0302 |
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DOI : |
10.3168/jds.2011-4256 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received February 9, 2011. / Accepted April 8, 2011. |
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Contenido : |
ABSTRACT.
Currently, the USDA uses a single-trait (ST) model with several intermediate steps to obtain genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type traits were obtained with a multiple-trait (MT) model using a unified single-step procedure. The phenotypic type data on up to 18 traits were available for 4,813,726 Holsteins, and single nucleotide polymorphism markers from the Illumina BovineSNP50 genotyping Beadchip (Illumina Inc., San Diego, CA) were available on 17,293 bulls. Genomic predictions were computed with several genomic relationship matrices (G) that assumed different allele frequencies: equal, base, current, and current scaled. Computations were carried out with ST and MT models. Procedures were compared by coefficients of determination (R 2) and regression of 2004 prediction of bulls with no daughters in 2004 on daughter deviations of those bulls in 2009. Predictions for 2004 also included parent averages without the use of genomic information. The R 2 for parent averages ranged from 10 to 34% for ST models and from 12 to 35% for MT models. The average R 2 for all G were 34 and 37% for ST and MT models, respectively. All of the regression coefficients were <1.0, indicating that estimated breeding values in 2009 of 1,307 genotyped young bulls' parents tended to be biased. The average regression coefficients ranged from 0.74 to 0.79 and from 0.75 to 0.80 for ST and MT models, respectively. When the weight for the inverse of the numerator relationship matrix (A -1) for genotyped animals was reduced from 1 to 0.7, R 2 remained almost identical while the regression coefficients increased by 0.11-0.26 and 0.12-0.23 for ST and MT models, respectively. The ST models required about 5s per iteration, whereas MT models required 3 (6) min per iteration for the regular (genomic) model. The MT single-step approach is feasible for 18 linear type traits in US Holstein cattle. Accuracy for genomic evaluation increases when switching ST models to MT models. Inflation of genomic evaluations for young bulls could be reduced by choosing a small weight for the A -1 for genotyped bulls.
© 2011 American Dairy Science Association. MenosABSTRACT.
Currently, the USDA uses a single-trait (ST) model with several intermediate steps to obtain genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type traits were obtained with a multiple-trait (MT) model using a unified single-step procedure. The phenotypic type data on up to 18 traits were available for 4,813,726 Holsteins, and single nucleotide polymorphism markers from the Illumina BovineSNP50 genotyping Beadchip (Illumina Inc., San Diego, CA) were available on 17,293 bulls. Genomic predictions were computed with several genomic relationship matrices (G) that assumed different allele frequencies: equal, base, current, and current scaled. Computations were carried out with ST and MT models. Procedures were compared by coefficients of determination (R 2) and regression of 2004 prediction of bulls with no daughters in 2004 on daughter deviations of those bulls in 2009. Predictions for 2004 also included parent averages without the use of genomic information. The R 2 for parent averages ranged from 10 to 34% for ST models and from 12 to 35% for MT models. The average R 2 for all G were 34 and 37% for ST and MT models, respectively. All of the regression coefficients were <1.0, indicating that estimated breeding values in 2009 of 1,307 genotyped young bulls' parents tended to be biased. The average regression coefficients ranged from 0.74 to 0.79 and from 0.75 to 0.80 for ST and MT models, respectively. When the weight for the i... Presentar Todo |
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Thesagro : |
MEJORAMIENTO GENÉTICO ANIMAL. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/3507/1/Aguilar-I.-2011.-Jr.Dairy-Sc.-v.948-p.4198-4204.pdf
https://www.journalofdairyscience.org/article/S0022-0302(11)00423-1/pdf
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Marc : |
LEADER 02915naa a2200205 a 4500
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008 2011 bl uuuu u00u1 u #d
022 $a0022-0302
024 7 $a10.3168/jds.2011-4256$2DOI
100 1 $aTSURUTA, S.
245 $aMultiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins.$h[electronic resource]
260 $c2011
500 $aArticle history: Received February 9, 2011. / Accepted April 8, 2011.
520 $aABSTRACT. Currently, the USDA uses a single-trait (ST) model with several intermediate steps to obtain genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type traits were obtained with a multiple-trait (MT) model using a unified single-step procedure. The phenotypic type data on up to 18 traits were available for 4,813,726 Holsteins, and single nucleotide polymorphism markers from the Illumina BovineSNP50 genotyping Beadchip (Illumina Inc., San Diego, CA) were available on 17,293 bulls. Genomic predictions were computed with several genomic relationship matrices (G) that assumed different allele frequencies: equal, base, current, and current scaled. Computations were carried out with ST and MT models. Procedures were compared by coefficients of determination (R 2) and regression of 2004 prediction of bulls with no daughters in 2004 on daughter deviations of those bulls in 2009. Predictions for 2004 also included parent averages without the use of genomic information. The R 2 for parent averages ranged from 10 to 34% for ST models and from 12 to 35% for MT models. The average R 2 for all G were 34 and 37% for ST and MT models, respectively. All of the regression coefficients were <1.0, indicating that estimated breeding values in 2009 of 1,307 genotyped young bulls' parents tended to be biased. The average regression coefficients ranged from 0.74 to 0.79 and from 0.75 to 0.80 for ST and MT models, respectively. When the weight for the inverse of the numerator relationship matrix (A -1) for genotyped animals was reduced from 1 to 0.7, R 2 remained almost identical while the regression coefficients increased by 0.11-0.26 and 0.12-0.23 for ST and MT models, respectively. The ST models required about 5s per iteration, whereas MT models required 3 (6) min per iteration for the regular (genomic) model. The MT single-step approach is feasible for 18 linear type traits in US Holstein cattle. Accuracy for genomic evaluation increases when switching ST models to MT models. Inflation of genomic evaluations for young bulls could be reduced by choosing a small weight for the A -1 for genotyped bulls. © 2011 American Dairy Science Association.
650 $aMEJORAMIENTO GENÉTICO ANIMAL
700 1 $aMISZTAL, I.
700 1 $aAGUILAR, I.
700 1 $aLAWLOR, T.J.
773 $tJournal of Dairy Science, 2011$gv.94, no.8, p.4198-4204. OPEN ACCESS.
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Registro original : |
INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha actual : |
03/07/2021 |
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Actualizado : |
03/07/2021 |
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Tipo de producción científica : |
Artículos en Revistas Agropecuarias |
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Autor : |
BOLOGNA, F.; TEXEIRA, J.; FASIOLO, C. |
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Afiliación : |
FRANCO BOLOGNA, Equipo Técnico del Proyecto; JAVIER TEXEIRA, Equipo Técnico del Proyecto; ANDREA CAROLINA FASIOLO FERREIRO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
FPTA 342: Implementación de tecnologías de manejo integrado en predios citrícolas familiares de Salto, con énfasis en plagas y enfermedades cuarentenarias como mosca de la fruta, cancro cítrico y mancha negra. |
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Complemento del título : |
Proyectos FPTA. |
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Fecha de publicación : |
2021 |
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Fuente / Imprenta : |
Revista INIA Uruguay, Junio 2021, no.65, p.95-98. |
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Serie : |
(Revista INIA; 65). |
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ISSN : |
1510-9011 |
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Idioma : |
Español |
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Contenido : |
La propuesta logró acercar las tecnologías disponibles para el manejo integrado de enfermedades y plagas a productores citrícolas familiares de Salto. Asimismo, el grupo de productores participantes del proyecto conoció la problemática del HLB que afecta a la región, a través de capacitaciones y giras al exterior. |
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Palabras claves : |
CITRICULTURA; FPTA (FONDO DE PROMOCIÓN DE TECNOLOGÍA AGROPECUARIA). |
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Thesagro : |
CITRUS (652); PROYECTOS DE INVESTIGACION. |
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Asunto categoría : |
A50 Investigación agraria |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/15772/1/Revista-INIA-65-Junio-2021-21.pdf
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Marc : |
LEADER 01120naa a2200217 a 4500
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008 2021 bl uuuu u00u1 u #d
022 $a1510-9011
100 1 $aBOLOGNA, F.
245 $aFPTA 342$bImplementación de tecnologías de manejo integrado en predios citrícolas familiares de Salto, con énfasis en plagas y enfermedades cuarentenarias como mosca de la fruta, cancro cítrico y mancha negra.$h[electronic resource]
260 $c2021
490 $a(Revista INIA; 65).
520 $aLa propuesta logró acercar las tecnologías disponibles para el manejo integrado de enfermedades y plagas a productores citrícolas familiares de Salto. Asimismo, el grupo de productores participantes del proyecto conoció la problemática del HLB que afecta a la región, a través de capacitaciones y giras al exterior.
650 $aCITRUS (652)
650 $aPROYECTOS DE INVESTIGACION
653 $aCITRICULTURA
653 $aFPTA (FONDO DE PROMOCIÓN DE TECNOLOGÍA AGROPECUARIA)
700 1 $aTEXEIRA, J.
700 1 $aFASIOLO, C.
773 $tRevista INIA Uruguay, Junio 2021, no.65, p.95-98.
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