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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha : |
18/03/2022 |
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Actualizado : |
02/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
SILVA, P.; EVERS, B.; KIEFFABER, A.; WANG, X.; BROWN, R.; GAO, L.; FRITZ, A.; CRAIN, J.; POLAND, J. |
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Afiliación : |
MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay./ Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, USA.; BYRON EVERS, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, Kansas, USA.; ALEXANDRIA KIEFFABER, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, Kansas, USA.; XU WANG, Department of Agricultural and Biological Engineering, University of Florida, IFAS Gulf Coast , Research and Education Center, Wimauma, Florida,USA.; RICHARD BROWN, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, USA.; LIANGLIANG GAO, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, USA.; ALLAN FRITZ, Department of Agronomy, College of Agriculture, Kansas State University, Manhattan, Kansas, 66506, USA.; JARED CRAIN, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, Kansas, 66506, USA.; JESSE POLAND, Department of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, Kansas, 66506, USA. |
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Título : |
Applied phenomics and genomics for improving barley yellow dwarf resistance in winter wheat. |
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Fecha de publicación : |
2022 |
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Fuente / Imprenta : |
G3 Genes| Genomes| Genetics, (Bethesda, Md.), 2022;, jkac064, Open Access. DOI:https://doi.org/10.1093/g3journal/jkac064 |
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DOI : |
10.1093/g3journal/jkac064 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 22 December 2021/Accepted: 12 March 2022/Published: 30 March 2022.
The Author(s) (2022) . Published by Oxford University Press on behalf of the Genetics Society of America. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
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Contenido : |
Abstract:
Barley yellow dwarf (BYD) is one of the major viral diseases of cereals. Phenotyping BYD in wheat is extremely challenging due to similarities to other biotic and abiotic stresses. Breeding for resistance is additionally challenging as the wheat primary germplasm pool lacks genetic resistance, with most of the few resistance genes named to date originating from a wild relative species. The objectives of this study were to, i) evaluate the use of high-throughput phenotyping (HTP) from unmanned aerial systems to improve BYD assessment and selection, ii) identify genomic regions associated with BYD resistance, and iii) evaluate genomic prediction models ability to predict BYD resistance. Up to 107 wheat lines were phenotyped during each of five field seasons under both insecticide treated and untreated plots. Across all seasons, BYD severity was lower with the insecticide treatment and plant height (PTHTM) and grain yield (GY) showed increased values relative to untreated entries. Only 9.2% of the lines were positive for the presence of the translocated segment carrying resistance gene Bdv2 on chromosome 7DL. Despite the low frequency, this region was identified through association mapping. Furthermore, we mapped a potentially novel genomic region for resistance on chromosome 5AS. Given the variable heritability of the trait (0.211 ? 0.806), we obtained relatively good predictive ability for BYD severity ranging between 0.06 ? 0.26. Including Bdv2 on the predictive model had a large effect for predicting BYD but almost no effect for PTHTM and GY. This study was the first attempt to characterize BYD using field-HTP and apply GS to predict the disease severity. These methods have the potential to improve BYD characterization and identifying new sources of resistance will be crucial for delivering BYD resistant germplasm. MenosAbstract:
Barley yellow dwarf (BYD) is one of the major viral diseases of cereals. Phenotyping BYD in wheat is extremely challenging due to similarities to other biotic and abiotic stresses. Breeding for resistance is additionally challenging as the wheat primary germplasm pool lacks genetic resistance, with most of the few resistance genes named to date originating from a wild relative species. The objectives of this study were to, i) evaluate the use of high-throughput phenotyping (HTP) from unmanned aerial systems to improve BYD assessment and selection, ii) identify genomic regions associated with BYD resistance, and iii) evaluate genomic prediction models ability to predict BYD resistance. Up to 107 wheat lines were phenotyped during each of five field seasons under both insecticide treated and untreated plots. Across all seasons, BYD severity was lower with the insecticide treatment and plant height (PTHTM) and grain yield (GY) showed increased values relative to untreated entries. Only 9.2% of the lines were positive for the presence of the translocated segment carrying resistance gene Bdv2 on chromosome 7DL. Despite the low frequency, this region was identified through association mapping. Furthermore, we mapped a potentially novel genomic region for resistance on chromosome 5AS. Given the variable heritability of the trait (0.211 ? 0.806), we obtained relatively good predictive ability for BYD severity ranging between 0.06 ? 0.26. Including Bdv2 on the predictive mo... Presentar Todo |
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Palabras claves : |
Barley yellow dwarf (BYD); Genomic Selection (GS); High-throughput Phenotyping (HTP); Resistance; Tolerance; Triticum aestivum; Virus. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16662/1/Applied-phenomics-and-genomics-for-improving-barley-yellow-dwarf-resistance-in-winter.-2022.Silva.pdf
https://academic.oup.com/g3journal/article-pdf/12/7/jkac064/44473353/jkac064.pdf
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Marc : |
LEADER 03303naa a2200325 a 4500
001 1062870
005 2022-09-02
008 2022 bl uuuu u00u1 u #d
024 7 $a10.1093/g3journal/jkac064$2DOI
100 1 $aSILVA, P.
245 $aApplied phenomics and genomics for improving barley yellow dwarf resistance in winter wheat.$h[electronic resource]
260 $c2022
500 $aArticle history: Received: 22 December 2021/Accepted: 12 March 2022/Published: 30 March 2022. The Author(s) (2022) . Published by Oxford University Press on behalf of the Genetics Society of America. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
520 $aAbstract: Barley yellow dwarf (BYD) is one of the major viral diseases of cereals. Phenotyping BYD in wheat is extremely challenging due to similarities to other biotic and abiotic stresses. Breeding for resistance is additionally challenging as the wheat primary germplasm pool lacks genetic resistance, with most of the few resistance genes named to date originating from a wild relative species. The objectives of this study were to, i) evaluate the use of high-throughput phenotyping (HTP) from unmanned aerial systems to improve BYD assessment and selection, ii) identify genomic regions associated with BYD resistance, and iii) evaluate genomic prediction models ability to predict BYD resistance. Up to 107 wheat lines were phenotyped during each of five field seasons under both insecticide treated and untreated plots. Across all seasons, BYD severity was lower with the insecticide treatment and plant height (PTHTM) and grain yield (GY) showed increased values relative to untreated entries. Only 9.2% of the lines were positive for the presence of the translocated segment carrying resistance gene Bdv2 on chromosome 7DL. Despite the low frequency, this region was identified through association mapping. Furthermore, we mapped a potentially novel genomic region for resistance on chromosome 5AS. Given the variable heritability of the trait (0.211 ? 0.806), we obtained relatively good predictive ability for BYD severity ranging between 0.06 ? 0.26. Including Bdv2 on the predictive model had a large effect for predicting BYD but almost no effect for PTHTM and GY. This study was the first attempt to characterize BYD using field-HTP and apply GS to predict the disease severity. These methods have the potential to improve BYD characterization and identifying new sources of resistance will be crucial for delivering BYD resistant germplasm.
653 $aBarley yellow dwarf (BYD)
653 $aGenomic Selection (GS)
653 $aHigh-throughput Phenotyping (HTP)
653 $aResistance
653 $aTolerance
653 $aTriticum aestivum
653 $aVirus
700 1 $aEVERS, B.
700 1 $aKIEFFABER, A.
700 1 $aWANG, X.
700 1 $aBROWN, R.
700 1 $aGAO, L.
700 1 $aFRITZ, A.
700 1 $aCRAIN, J.
700 1 $aPOLAND, J.
773 $tG3 Genes| Genomes| Genetics, (Bethesda, Md.), 2022;, jkac064, Open Access. DOI:https://doi.org/10.1093/g3journal/jkac064
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INIA La Estanzuela (LE) |
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| 1. |  | FEDERICI, M.; ARTIGAS, R.; GUERRA, S.; BRANDA, A.; VÁZQUEZ, N.; NICOLINI, P.; DUTRA, F.; LLAMBÍ, S. Detection of the Brachyspina mutation in Uruguayan Holstein cows using real time PCR and melting curve analysis. [Detecção da mutação da Brachyspina em vacas Holandês Uruguaias usando PCR em tempo real e análise da curva de fusão.] Ciencia Rural, 2021, volume 51 (9), Article e20200872. OPEN ACCESS. Doi: https://doi.org/10.1590/0103-8478cr20200872 Article history: Received 17 Sept 2020; Accepted 05 Jan 2021; Reviewed 07 Mar 2021; Publication in this collection 02 June 2021; Date of issue 2021.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 3. | | Arboleya, J.; Gilsanz, J.C.; Allauime, F.; Leoni, C.; Falero, M.; Aranda, S.; Guerra, S. Manejo sustentable en la producción hortícola intensiva ln: "INIA, Programa Nacional de Investigación en Producción y Sustentabilidad Ambiental; INIA, Programa Nacional de Investigación en Producción Hortícola; DIGEGRA". Jardín de abonos verdes de verano. Módulo de investigación comprobatoria hortícola, Día de campo. Canelones (Uruguay): INIA Las Brujas, 2011. p. 17-28 (INIA Serie Actividades de Difusión; 641) "INIA, Programa Nacional de Investigación en Producción y Sustentabilidad Ambiental; INIA, Programa Nacional de Investigación en Producción Hortícola; DIGEGRA"| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 5. | | ARBOLEYA, J.; GILSANZ, J.C.; ALLIAUME, F.; LEONI, C.; FALERO, M.; GUERRA, S. Manejo sustentable en la producción hortícola intensiva. Evolución del contenido de agua, de propiedades físicas, químicas, biológicas del suelo y del rendimiento en repollo y zapallo. [resumen] Suelos. Fertilidad. ln: Congreso Nacional de Horti-Fruticultura, 12. Jornadas Regionales de Manejo Poscosecha de Frutas. Seminario Suelos en Horticultura. Seminario Frutales de Pepita. 20-23 octubre 2012, Montevideo (UY) Trabajos presentados. Montevideo (UY): INIA; SUHF, 2010. p.122.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 6. | | ARBOLEYA, J.; GILSANZ, J.; ALLIAUME, F.; LEONI, C.; FALERO, M.; GUERRA, S. Minimum tillage and vegetable crop rotation Agrociencia Uruguay, 2012, v. 16, no.3 (Special Issue-ISTRO), p. 60-66. Special Issue: ISTRO - Striving for sustainable high productivity through improved soil and crop management.| Tipo: Artículos en Revistas Indexadas Nacionales | Circulación / Nivel : B - 2 |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | ARTIGAS, R.; FEDERICI, M.; VÁZQUEZ, N.; ALCÁNTARA, M.; RAMÍREZ, M.; GUERRA, S.; DUTRA, F.; LLAMBÍ, S. Identificación por catálogo y detección molecular de bovinos Holstein portadores de braquiespina en Uruguay. [Identification through sire catalogues analysis and molecular detection of brachyspina carriers in Uruguayan Holstein.] Artículo original. FAVE Sección Ciencias Veterinarias, 2020, volume 19 (2), 50-54. OPEN ACCESS. DOI: https://doi.org/10.14409/favecv.v19i2.9523 Article history: Recibido 3 Marzo 2020; Aceptado 1 Agosto 2020; Disponible en línea 14 Agosto 2020.
Editor: P. Beldomenico.
Esta obra está bajo licencia internacional Creative Commons Reconocimiento-NoComercial-CompartirIgual 4.0.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 8. | | FEDERICI, M.; RIGAMONTI, N.; FERRARI, G.; ROVIRA, P.J.; TORRES, P.; GUERRA, S.; SIMÓN, C.; FERNÁNDEZ-CIGANDA, S. Análisis de comunidades de cianobacterias y microorganismos asociados al sedimento mediante secuenciación del gen 16S ARNr y qPCR en el embalse rincón del bonete. 161. (resúmen) Áreas temáticas: Ciencias del Mar y Limnología. In: Physiological Mini Reviews, 2022, volume 15, Special Issue: III (3er) Congreso Nacional de Biociencias Octubre 2022, Montevideo, Uruguay. p.145. Resumen publicado en las jornadas de BIOCIENCIAS: II Jornadas Binacionales Argentina-Uruguay; III Congreso Nacional 2022 "Ciencia para el desarrollo sustentable".| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | GARCÍA, M.; ALLIAUME, F.; MANCASSOLA, V.; PELUFFO, S.; DIESTE, J.P.; GUERRA, S.; DOGLIOTTI, S.; LEONI, C. La importancia del recurso suelo en la sostenibilidad de los sistemas de producción en el sur de Uruguay: Proyecto EULACIAS-FPTA 209 Noticiero, 2009, no.16, p.42-45| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 10. | | DOGLIOTTI, S.; ABEDALA, C.; AGUERRE, V.; ALBIN, A.; ALLIAUME, F.; ÁLVAREZ, J.; BACIGALUPE, G.F.; BARRETO, M.; CHIAPPE, M.; CORRAL, J.; DIESTE, J.P.; GARCÍA DE SOUZA, M.C.; GUERRA, S.; LEONI, C.; MALÁN, I.; MANCASSOLA, V.; PEDEMONTE, A.; PELUFFO, S.; POMBO, C.; SALVO, G.; SCARLATO, M. Desarrollo sostenible de sistemas de producción hortícolas y hortícola-ganaderos familiares: una experiencia de co-innovación Montevideo (UY): INIA, 2012. 112 p. (Serie FPTA-INIA; 33) "Proyecto FPTA 209: "Diseño, implementación y evaluación de sistemas de producción intensivos sostenibles en la zona sur del Uruguay". Período de Ejecución: Dic.2006-Jun.2010| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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