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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
11/09/2014 |
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Actualizado : |
30/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
LOURENCO, D.A.L.; MISZTAL, I.; WANG, H.; AGUILAR, I.; TSURUTA, S.; BERTRAND, J.K. |
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Afiliación : |
IGNACIO AGUILAR GARCIA, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay. |
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Título : |
Prediction accuracy for a simulated maternally affected trait of beef cattle using different genomic evaluation models. |
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Fecha de publicación : |
2013 |
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Fuente / Imprenta : |
Journal of Animal Science, 2013, v.91, no.9, p.4090-4098. |
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ISSN : |
0021-8812 |
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DOI : |
10.2527/jas.2012-5826 |
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Idioma : |
Inglés |
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Notas : |
Article history: Published online July 26, 2013.
This study was partially funded by the American Angus Association (St. Joseph, MO) and the USDA Agriculture and Food Research Initiative (Grant no. 2009-65205-05665 from the USDA National Institute of Food and Agriculture Animal Genome Program). Helpful comments and suggestions from W. M. Snelling (U.S. Meat Animal Research Center, ARS, USDA, Clay Center, NE) and two anonymous reviewers are gratefully acknowledged. |
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Contenido : |
ABSTRACT.
Different methods for genomic evaluation were compared for accuracy and feasibility of evaluation using phenotypic, pedigree, and genomic information for a trait influenced by a maternal effect. A simulated population was constructed that included 15,800 animals in 5 generations. Genotypes from 45,000 SNP were available for 1,500 animals in the last 3 generations. Genotyped animals in the last generation had no phenotypes. Weaning weight data were simulated using an animal model with direct and maternal effects. Additive direct and maternal effects were considered either noncorrelated (Graphic) or negatively correlated (Graphic). Methods of analysis were traditional BLUP, BayesC using phenotypes and ignoring maternal effects (BayesCPR), BayesC using deregressed EBV (BayesCDEBV), and single-step genomic BLUP (ssGBLUP). Whereas BayesCPR can be used when phenotypes of only genotyped animals are available, BayesCDEBV can be used when BLUP EBV of genotyped animals are available, and ssGBLUP is suitable when genotypes, phenotypes, and pedigrees are jointly available. For all genotyped and young genotyped animals, mean accuracies from BayesCPR and BayesCDEBV were lower than accuracies from BLUP for direct and maternal effects. The differences in mean accuracy were greater when genetic correlation was negative. Gains in accuracy were observed when ssGBLUP was compared with BLUP; for the direct (maternal) effect the average gain was 0.01 (0.02) for all genotyped animals and 0.03 (0.02) for young genotyped animals without phenotypes. Similar gains were observed for 0 and negative genetic correlation. Accuracy with BayesCPR was affected by ignoring phenotypes of nongenotyped animals and maternal effect and by not accounting for parent average. Accuracy with BayesCDEBV was affected by approximations needed for deregression, not accounting for parent average, and sequential rather than simultaneous fitting of genomic and nongenomic information. Whereas BayesCDEBV presented a considerable bias, especially for maternal effect, ssGBLUP was unbiased for both effects. The computing time was 1 s for BLUP, 44 s for ssGBLUP, and over 2,000 s for BayesC. Greatest computational efficiency and accuracy of genomic prediction for a maternally affected trait was obtained when information from all nongenotyped but related individuals was included and phenotypes, pedigree, and genotypes were available and considered jointly. Increasing the gain in accuracy of genomic predictions obtained by ssGBLUP over BLUP may require an increase in the number of genotyped animals. MenosABSTRACT.
Different methods for genomic evaluation were compared for accuracy and feasibility of evaluation using phenotypic, pedigree, and genomic information for a trait influenced by a maternal effect. A simulated population was constructed that included 15,800 animals in 5 generations. Genotypes from 45,000 SNP were available for 1,500 animals in the last 3 generations. Genotyped animals in the last generation had no phenotypes. Weaning weight data were simulated using an animal model with direct and maternal effects. Additive direct and maternal effects were considered either noncorrelated (Graphic) or negatively correlated (Graphic). Methods of analysis were traditional BLUP, BayesC using phenotypes and ignoring maternal effects (BayesCPR), BayesC using deregressed EBV (BayesCDEBV), and single-step genomic BLUP (ssGBLUP). Whereas BayesCPR can be used when phenotypes of only genotyped animals are available, BayesCDEBV can be used when BLUP EBV of genotyped animals are available, and ssGBLUP is suitable when genotypes, phenotypes, and pedigrees are jointly available. For all genotyped and young genotyped animals, mean accuracies from BayesCPR and BayesCDEBV were lower than accuracies from BLUP for direct and maternal effects. The differences in mean accuracy were greater when genetic correlation was negative. Gains in accuracy were observed when ssGBLUP was compared with BLUP; for the direct (maternal) effect the average gain was 0.01 (0.02) for all genotyped animals an... Presentar Todo |
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Thesagro : |
GANADERÍA; GANADO DE CARNE; MEJORAMIENTO GENÉTICO ANIMAL; MODELOS DE SIMULACIÓN; SELECCIÓN GENÓMICA. |
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Asunto categoría : |
L01 Ganadería |
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Marc : |
LEADER 03895naa a2200277 a 4500
001 1050147
005 2019-10-30
008 2013 bl uuuu u00u1 u #d
022 $a0021-8812
024 7 $a10.2527/jas.2012-5826$2DOI
100 1 $aLOURENCO, D.A.L.
245 $aPrediction accuracy for a simulated maternally affected trait of beef cattle using different genomic evaluation models.$h[electronic resource]
260 $c2013
500 $aArticle history: Published online July 26, 2013. This study was partially funded by the American Angus Association (St. Joseph, MO) and the USDA Agriculture and Food Research Initiative (Grant no. 2009-65205-05665 from the USDA National Institute of Food and Agriculture Animal Genome Program). Helpful comments and suggestions from W. M. Snelling (U.S. Meat Animal Research Center, ARS, USDA, Clay Center, NE) and two anonymous reviewers are gratefully acknowledged.
520 $aABSTRACT. Different methods for genomic evaluation were compared for accuracy and feasibility of evaluation using phenotypic, pedigree, and genomic information for a trait influenced by a maternal effect. A simulated population was constructed that included 15,800 animals in 5 generations. Genotypes from 45,000 SNP were available for 1,500 animals in the last 3 generations. Genotyped animals in the last generation had no phenotypes. Weaning weight data were simulated using an animal model with direct and maternal effects. Additive direct and maternal effects were considered either noncorrelated (Graphic) or negatively correlated (Graphic). Methods of analysis were traditional BLUP, BayesC using phenotypes and ignoring maternal effects (BayesCPR), BayesC using deregressed EBV (BayesCDEBV), and single-step genomic BLUP (ssGBLUP). Whereas BayesCPR can be used when phenotypes of only genotyped animals are available, BayesCDEBV can be used when BLUP EBV of genotyped animals are available, and ssGBLUP is suitable when genotypes, phenotypes, and pedigrees are jointly available. For all genotyped and young genotyped animals, mean accuracies from BayesCPR and BayesCDEBV were lower than accuracies from BLUP for direct and maternal effects. The differences in mean accuracy were greater when genetic correlation was negative. Gains in accuracy were observed when ssGBLUP was compared with BLUP; for the direct (maternal) effect the average gain was 0.01 (0.02) for all genotyped animals and 0.03 (0.02) for young genotyped animals without phenotypes. Similar gains were observed for 0 and negative genetic correlation. Accuracy with BayesCPR was affected by ignoring phenotypes of nongenotyped animals and maternal effect and by not accounting for parent average. Accuracy with BayesCDEBV was affected by approximations needed for deregression, not accounting for parent average, and sequential rather than simultaneous fitting of genomic and nongenomic information. Whereas BayesCDEBV presented a considerable bias, especially for maternal effect, ssGBLUP was unbiased for both effects. The computing time was 1 s for BLUP, 44 s for ssGBLUP, and over 2,000 s for BayesC. Greatest computational efficiency and accuracy of genomic prediction for a maternally affected trait was obtained when information from all nongenotyped but related individuals was included and phenotypes, pedigree, and genotypes were available and considered jointly. Increasing the gain in accuracy of genomic predictions obtained by ssGBLUP over BLUP may require an increase in the number of genotyped animals.
650 $aGANADERÍA
650 $aGANADO DE CARNE
650 $aMEJORAMIENTO GENÉTICO ANIMAL
650 $aMODELOS DE SIMULACIÓN
650 $aSELECCIÓN GENÓMICA
700 1 $aMISZTAL, I.
700 1 $aWANG, H.
700 1 $aAGUILAR, I.
700 1 $aTSURUTA, S.
700 1 $aBERTRAND, J.K.
773 $tJournal of Animal Science, 2013$gv.91, no.9, p.4090-4098.
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INIA Las Brujas (LB) |
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| Acceso al texto completo restringido a Biblioteca INIA Tacuarembó. Por información adicional contacte bibliotb@tb.inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Tacuarembó. |
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Fecha actual : |
14/04/2015 |
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Actualizado : |
25/11/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
WILMAN, D.; OLMOS, F.; HAMILTON, R.S. |
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Afiliación : |
D. WILMAN, Institute of Rural Sciences, University of Wales, Aberystwyth SY23 3AL, UK; FERNANDO ELCEAR OLMOS LOPEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; R. S. HAMILTON, Institute of Grassland and Environmental Research, Aberystwyth SY23 3EB, UK. |
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Título : |
The potential of seed-shedding and seedling development to contribute to the persistence of white clover (Trifolium repens) in grazed swards in Uruguay. |
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Fecha de publicación : |
2005 |
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Fuente / Imprenta : |
Journal of Agricultural Science, 2005, v143, 493-501. |
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DOI : |
10.1017/S0021859605005654 |
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Idioma : |
Inglés |
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Notas : |
Article history: Revised MS received 19 August 2005. |
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Contenido : |
The present study was conducted to investigate whether white clover (Trifolium repens L.) in grazed swards in Uruguay can produce and shed sufficient seed, and whether sufficient seedlings can develop and survive, to make an important contribution to the long-term persistence of the species. Five sites, on which survival of white clover had been better than is usual in Uruguay, were studied in 1995–97. The sites had been sown with white clover 11–15 years previously and were managed mainly by cattle grazing. The number of white clover inflorescences/m2 was at least 18 at nearly half the counts in the study and the number of viable seeds in the top 5 cm of soil was at least 1500 at half the counts. The results for both the above variables suggest that all five sites had a supply of seed greater than a commercial seed rate at some times of the year. However, the number of seedlings/m2 was >100, a possible target in these conditions, at only one fifth of the counts, and the proportion of seedlings that
survived from one recording date to the next (a period of 4–5 weeks) varied from >0.7 to zero. It seems, therefore, that, in these conditions, the failure of seeds to convert to established plants is likely to be a greater constraint than the production and shedding of seeds. There was considerable variability with time, and between and within sites at each stage of the reproductive cycle. On one site, competition from Bermudagrass (Cynodon dactylon) greatly reduced the number of white clover
seedlings/m2. Overall, the results suggest that white clover in grazed swards in Uruguay can produce and shed sufficient seed, and that sufficient seedlings can develop and survive, to make a significant contribution to the long-term persistence of the species. However, each year there is a risk of seedlings being killed in dry, hot weather. MenosThe present study was conducted to investigate whether white clover (Trifolium repens L.) in grazed swards in Uruguay can produce and shed sufficient seed, and whether sufficient seedlings can develop and survive, to make an important contribution to the long-term persistence of the species. Five sites, on which survival of white clover had been better than is usual in Uruguay, were studied in 1995–97. The sites had been sown with white clover 11–15 years previously and were managed mainly by cattle grazing. The number of white clover inflorescences/m2 was at least 18 at nearly half the counts in the study and the number of viable seeds in the top 5 cm of soil was at least 1500 at half the counts. The results for both the above variables suggest that all five sites had a supply of seed greater than a commercial seed rate at some times of the year. However, the number of seedlings/m2 was >100, a possible target in these conditions, at only one fifth of the counts, and the proportion of seedlings that
survived from one recording date to the next (a period of 4–5 weeks) varied from >0.7 to zero. It seems, therefore, that, in these conditions, the failure of seeds to convert to established plants is likely to be a greater constraint than the production and shedding of seeds. There was considerable variability with time, and between and within sites at each stage of the reproductive cycle. On one site, competition from Bermudagrass (Cynodon dactylon) greatly reduced the number of... Presentar Todo |
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Thesagro : |
TRIFOLIUM REPENS; URUGUAY. |
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Asunto categoría : |
A50 Investigación agraria |
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Marc : |
LEADER 02518naa a2200193 a 4500
001 1052520
005 2019-11-25
008 2005 bl uuuu u00u1 u #d
024 7 $a10.1017/S0021859605005654$2DOI
100 1 $aWILMAN, D.
245 $aThe potential of seed-shedding and seedling development to contribute to the persistence of white clover (Trifolium repens) in grazed swards in Uruguay.
260 $c2005
500 $aArticle history: Revised MS received 19 August 2005.
520 $aThe present study was conducted to investigate whether white clover (Trifolium repens L.) in grazed swards in Uruguay can produce and shed sufficient seed, and whether sufficient seedlings can develop and survive, to make an important contribution to the long-term persistence of the species. Five sites, on which survival of white clover had been better than is usual in Uruguay, were studied in 1995–97. The sites had been sown with white clover 11–15 years previously and were managed mainly by cattle grazing. The number of white clover inflorescences/m2 was at least 18 at nearly half the counts in the study and the number of viable seeds in the top 5 cm of soil was at least 1500 at half the counts. The results for both the above variables suggest that all five sites had a supply of seed greater than a commercial seed rate at some times of the year. However, the number of seedlings/m2 was >100, a possible target in these conditions, at only one fifth of the counts, and the proportion of seedlings that survived from one recording date to the next (a period of 4–5 weeks) varied from >0.7 to zero. It seems, therefore, that, in these conditions, the failure of seeds to convert to established plants is likely to be a greater constraint than the production and shedding of seeds. There was considerable variability with time, and between and within sites at each stage of the reproductive cycle. On one site, competition from Bermudagrass (Cynodon dactylon) greatly reduced the number of white clover seedlings/m2. Overall, the results suggest that white clover in grazed swards in Uruguay can produce and shed sufficient seed, and that sufficient seedlings can develop and survive, to make a significant contribution to the long-term persistence of the species. However, each year there is a risk of seedlings being killed in dry, hot weather.
650 $aTRIFOLIUM REPENS
650 $aURUGUAY
700 1 $aOLMOS, F.
700 1 $aHAMILTON, R.S.
773 $tJournal of Agricultural Science, 2005, v143, 493-501.
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