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 | Acceso al texto completo restringido a Biblioteca INIA Treinta y Tres. Por información adicional contacte bibliott@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
04/01/2021 |
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Actualizado : |
04/01/2021 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
CRUPPE, G.; SILVA, P.; SILVA, C. LEMES DA; PETERSON, G.; PEDLEY, K. F.; CRUZ, C. D.; ASIF, M.; LOLLATO, R. P.; FRITZ, A. K.; VALENT, B. |
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Afiliación : |
GIOVANA CRUPPE, Department of Plant pathology, Kansas State University, USA.; MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. Deparment of Plant Pathology, Kansas State University, KS, USA.; CRISTIANO LEMES DA SILVA, Corteva Agriscience, Windfall, IN, USA.; GARY PETERSON, United State Department of Agriculture Agricultural Research Service, Foreign Desease-Weed Science Research Unit, USA.; KERRY F. PEDLEY, United State Department of Agriculture Agricultural Research Service, Foreign Desease-Weed Science Research Unit, USA.; CHRISTIAN D. CRUZ, Department of Botany and Plant Pathology, Purdue University, USA.; MOHAMMAD ASIF, Department of Agronomy, Kansas State University, USA. Heartland Plant Innovations, Manhattan KS, USA.; ROMULO P. LOLLATO, Department of Agronomy, Kansas State University, USA.; ALLAN K. FRITZ, Department of Agronomy, Kansas State University, USA.; BARBARA VALENT, Deparment of Plant Pathology, Kansas State University, USA. |
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Título : |
Genome wide association reveals limited benefits of pyramiding the 1B and 1D loci with the 2Nv S translocation for wheat blast control. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Crop Science [First Online]. DOI: https://doi.org/10.1002/csc2.20397 |
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Páginas : |
42 p. |
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DOI : |
10.1002/csc2.20397 |
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Idioma : |
Inglés |
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Notas : |
Article history: Manuscript received, 09 June 2020 // Manuscript accepted, 23 October 2020 // Accepted manuscript online, 31 October 2020 // Version of Record online,
22 December 2020.
Corresponding authors: Barbara Valent, bvalent@ksu.edu ; Giovana Cruppe, gicruppe@ksu.edu |
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Contenido : |
Resistance to wheat spike blast (WSB), caused by the Magnaporthe oryzae triticum pathotype (MoT), has relied upon a single major source: the 2NvS translocation introgressed from the wild relative Aegilops ventricosa Tausch. However, this resistance is partial and recently partially overcome by newer MoT races. To characterize potential novel loci conferring resistance to WSB, we conducted a genome?wide association study (GWAS) using a diverse panel of 384 wheat genotypes phenotyped under three controlled?environment conditions using MoT isolates T?25 (301 genotypes), B?71 (87 genotypes), and 008 (49 genotypes). Genotyping?by?sequencing identified 13,175 single nucleotide polymorphisms (SNPs) after filtering. Principal components analysis (PCA) identified two clusters based on the presence or absence of the 2NvS translocation, and the first three PCAs explained 13% of the genetic variation. Three individual analyses were performed (full [all genotypes combined], 2NvS genotypes only, and non?2NvS genotypes only) using a linear mixed model and a threshold of significance of false discovery rate at 5%. Association analysis detected 25 significant SNPs for the full GWAS with isolate T?25, in which 21 were mapped on chromosome 2A in the same physical position as the 2NvS translocation. Highly significant linkage disequilibrium among these SNPs suggested they might tag the same quantitative trait locus (QTL). No significant associations were identified with isolates B?71 and 008, likely due to the small sample size. A QTL pyramiding analysis showed that the combination of multiple QTL was not statistically different from the individual effect of the 2A QTL. Further validation of these genomic regions can aid breeding for broad spectrum and durable WSB resistanc MenosResistance to wheat spike blast (WSB), caused by the Magnaporthe oryzae triticum pathotype (MoT), has relied upon a single major source: the 2NvS translocation introgressed from the wild relative Aegilops ventricosa Tausch. However, this resistance is partial and recently partially overcome by newer MoT races. To characterize potential novel loci conferring resistance to WSB, we conducted a genome?wide association study (GWAS) using a diverse panel of 384 wheat genotypes phenotyped under three controlled?environment conditions using MoT isolates T?25 (301 genotypes), B?71 (87 genotypes), and 008 (49 genotypes). Genotyping?by?sequencing identified 13,175 single nucleotide polymorphisms (SNPs) after filtering. Principal components analysis (PCA) identified two clusters based on the presence or absence of the 2NvS translocation, and the first three PCAs explained 13% of the genetic variation. Three individual analyses were performed (full [all genotypes combined], 2NvS genotypes only, and non?2NvS genotypes only) using a linear mixed model and a threshold of significance of false discovery rate at 5%. Association analysis detected 25 significant SNPs for the full GWAS with isolate T?25, in which 21 were mapped on chromosome 2A in the same physical position as the 2NvS translocation. Highly significant linkage disequilibrium among these SNPs suggested they might tag the same quantitative trait locus (QTL). No significant associations were identified with isolates B?71 and 008, l... Presentar Todo |
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Palabras claves : |
2Nv S TRANSLOCATION; DURABLE RESISTANCE; MAGNAPORTHE ORYZAE TRITICUM; TRIGO; WHEAT; WHEAT SPIKE BLAST. |
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Asunto categoría : |
F01 Cultivo |
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Marc : |
LEADER 03037naa a2200337 a 4500
001 1061645
005 2021-01-04
008 2020 bl uuuu u00u1 u #d
024 7 $a10.1002/csc2.20397$2DOI
100 1 $aCRUPPE, G.
245 $aGenome wide association reveals limited benefits of pyramiding the 1B and 1D loci with the 2Nv S translocation for wheat blast control.$h[electronic resource]
260 $c2020
300 $a42 p.
500 $aArticle history: Manuscript received, 09 June 2020 // Manuscript accepted, 23 October 2020 // Accepted manuscript online, 31 October 2020 // Version of Record online, 22 December 2020. Corresponding authors: Barbara Valent, bvalent@ksu.edu ; Giovana Cruppe, gicruppe@ksu.edu
520 $aResistance to wheat spike blast (WSB), caused by the Magnaporthe oryzae triticum pathotype (MoT), has relied upon a single major source: the 2NvS translocation introgressed from the wild relative Aegilops ventricosa Tausch. However, this resistance is partial and recently partially overcome by newer MoT races. To characterize potential novel loci conferring resistance to WSB, we conducted a genome?wide association study (GWAS) using a diverse panel of 384 wheat genotypes phenotyped under three controlled?environment conditions using MoT isolates T?25 (301 genotypes), B?71 (87 genotypes), and 008 (49 genotypes). Genotyping?by?sequencing identified 13,175 single nucleotide polymorphisms (SNPs) after filtering. Principal components analysis (PCA) identified two clusters based on the presence or absence of the 2NvS translocation, and the first three PCAs explained 13% of the genetic variation. Three individual analyses were performed (full [all genotypes combined], 2NvS genotypes only, and non?2NvS genotypes only) using a linear mixed model and a threshold of significance of false discovery rate at 5%. Association analysis detected 25 significant SNPs for the full GWAS with isolate T?25, in which 21 were mapped on chromosome 2A in the same physical position as the 2NvS translocation. Highly significant linkage disequilibrium among these SNPs suggested they might tag the same quantitative trait locus (QTL). No significant associations were identified with isolates B?71 and 008, likely due to the small sample size. A QTL pyramiding analysis showed that the combination of multiple QTL was not statistically different from the individual effect of the 2A QTL. Further validation of these genomic regions can aid breeding for broad spectrum and durable WSB resistanc
653 $a2Nv S TRANSLOCATION
653 $aDURABLE RESISTANCE
653 $aMAGNAPORTHE ORYZAE TRITICUM
653 $aTRIGO
653 $aWHEAT
653 $aWHEAT SPIKE BLAST
700 1 $aSILVA, P.
700 1 $aSILVA, C. LEMES DA
700 1 $aPETERSON, G.
700 1 $aPEDLEY, K. F.
700 1 $aCRUZ, C. D.
700 1 $aASIF, M.
700 1 $aLOLLATO, R. P.
700 1 $aFRITZ, A. K.
700 1 $aVALENT, B.
773 $tCrop Science [First Online]. DOI: https://doi.org/10.1002/csc2.20397
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INIA Treinta y Tres (TT) |
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| Registros recuperados : 633 | |
| 22. |  | CLAVIJO, F.; CURLAND, R.D.; ROMAN-REYNA, V.; DILL-MACKY, R.; PEREYRA, S.; SIRI, M.I. Caracterización de especies del género Xanthomonas patógenas de trigo en Uruguay. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 31. Financiamiento: Proyecto de Investigación Fundamental Fondo Clemente Estable (ANII); Programa Grupos de Investigación I+D de CSIC.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 24. | | GAO, L.; KOO, D.H.; JULIANA, P.; RIFE, T.; SINGH, D.; CRISTIANO LEMES DA SILVA; LUX, T.; DORN, K.M.; CLINESMITH, M.; SILVA, P.; WANG, X.; SPANNAGL, M.; MONAT, C.; FRIEBE, B.; STEUERNAGEL, B.; MUEHLBAUER, G.J.; WALKOWIAK, S.; POZNIAK, C.; SINGH, R.; STEIN, N.; MASCHER, M.; FRITZ, A.; POLAND, J. The Aegilops ventricosa 2N v S segment in bread wheat: cytology, genomics and breeding. Theoretical and Applied Genetics, volume 134, pag. 529?542, feb 2021. Open Access. Doi: https://doi.org/10.1007/s00122-020-03712-y Article history:Received: 22 June 2020 / Accepted: 17 October 2020/ Published:12 November 2020/ Issue Date:February 2021| Biblioteca(s): INIA La Estanzuela. |
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| 25. | | FRANCIA, C.; PEREYRA, S.; BENÍTEZ, N.; PÉREZ, C. Comparación de distintos métodos de cuantificación de la fusariosis de la espiga de trigo a campo y postcosecha y el contenido de deoxinivalenol en grano. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 40 Financiamiento: Beca de maestría ANII, beca de finalización CAP.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 26. | | JARDON, M.; ALVAREZ PRADO, S.; SEVERINI, A.D.; FERNÁNDEZ LONG, M.E.; CRESPO, A.O.; CASTRO, M.; QUINCKE, M.; KAVANOVÁ, M.; SCHOLZ DRODOWSKI, R.; CHÁVEZ SANABRIA, P.; PEREZ-GIANMARCO, T.; ALFARO, C.; CASTILLO, D.; MATUS, I.; GÓMEZ, D; SERRAGO, R.; GÓNZALEZ, F.G.; MIRALLES, D.J. CRONOTRIGO 2.0: nueva versión del modelo de predicción fenológica para el cultivo de trigo. In: Revista Técnica de la Asociación Argentina de Productores en Siembra Directa, Abril 2021, Rosario: AAPRESID. p. 53-60. Se incorporaron cambios respecto a la versión original en cuanto al alcance y la precisión del modelo.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA La Estanzuela. |
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| 27. | | BRANCATTI, G.; GARMENDIA, G.; PEREYRA, S.; VERO, S. Fusarium en trigo: aislamiento, identificación, caracterización según quimiotipos y sensibilidad a fungicidas. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 28 Financiamiento: ANII, CAP.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 28. | | CURIN, F.; BALMACEDA, M.; BRACH, A.; CASTRO, M.; KAVANOVÁ, M.; OTERO, A.; ROSETTI, L.; RUIZ, M.; ALFARO, C.; QUINCKE, A.; ZUIL, S.; GONZÁLEZ, F.G. Evaluación de cultivares de trigo contrastantes para tolerancia a deficit hídrico en un amplio rango de ambientes en el cono sur de America. In: IX Congreso Nacional de Calidad de Trigo, 9°; VII Simposio de Cereales de siembra otoño-invernal; III Reunión del Mercosur, 29-30 setiembre 2021, tres arroyos, Provincia de Buenos Aires, Argentina: La Chacra Experimental Integrada Barrow, Instituto Nacional de Tecnología Agropecuaria (INTA), Centro Regional de Ingenieros Agrónomos de Tres Arroyos (CRIATA), Centro Regional de Estudios Superiores de Tres Arroyos (CRESTA).Modalidad Virtual.| Biblioteca(s): INIA La Estanzuela. |
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| 30. | | SANGUIÑEDO, P.; ABREO, E.; ALBORÉS, S. Nanopartículas biogénicas de plata a partir de Trichoderma spp. y su aplicación en el control de fitopatógenos. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 51 Financiamiento: Proyecto INNOVAGRO ANII FSA_1_152546, PEDECIBA QUÍMICA, Beca ANII, Posgrado en Biotecnología-UdelaR.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 37. | | KOLMER, J.A.; HERMAN, A.; ORDOÑEZ, M.E.; GERMAN, S.; MORGOUNOV, A.; PRETORIUS, Z.; VISSER, B.; ANISKSTER, Y.; ACEVEDO, M. Endemic and panglobal genetic groups, and divergence of host-associated forms in worldwide collections of the wheat leaf rust fungus Puccinia triticina as determined by genotyping by sequencing. Heredity, 1 March 2020, Volume 124, Issue 3, Pages 397-409. Doi: https://doi.org/10.1038/s41437-019-0288-x Article history: Received: 5 September 2019 / Revised: 3 December 2019 / Accepted: 3 December 2019 / Published online: 20 December 2019.
Supplementary information The online version of this article...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 38. | | JOHANSSON, E.; BRANLARD, G.; CUNIBERTI, M.; FLAGELLA, Z.; HÜSKEN, A.; NURIT, E.; PEÑA, R.J.; SISSONS, M.; VÁZQUEZ, D. Genotypic and Environmental Effects on Wheat Technological and Nutritional Quality. In: Igrejas G., Ikeda T., Guzmán C. (eds). Wheat Quality For Improving Processing And Human Health. Cham:Springer. Doi: https://doi.org/10.1007/978-3-030-34163-3_8 p. 171-204. Article histotory: First Online: 18 March 2020.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA La Estanzuela. |
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| 39. | | HELGUERA, M.; ABUGALIEVA, A.; BATTENFIELD, S.; BÉKÉS, F.; BRANLARD, G.; CUNIBERTI, M.; HÜSKEN,A.; JOHANSSON, E.; MORRIS, C.F.; NURIT, E.; SISSONS, M.; VÁZQUEZ, D. Grain Quality in Breeding. In: Igrejas G., Ikeda T., Guzmán C. (eds). Wheat Quality For Improving Processing And Human Health. Cham:Springer. Doi:
https://doi.org/10.1007/978-3-030-34163-3_12 p. 273-307. Article history:First Online: 18 March 2020.| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA La Estanzuela. |
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| 40. | | CRUPPE, G.; SILVA, P.; SILVA, C. LEMES DA; PETERSON, G.; PEDLEY, K. F.; CRUZ, C. D.; ASIF, M.; LOLLATO, R. P.; FRITZ, A. K.; VALENT, B. Genome wide association reveals limited benefits of pyramiding the 1B and 1D loci with the 2Nv S translocation for wheat blast control. Crop Science [First Online]. DOI: https://doi.org/10.1002/csc2.20397 42 p. Article history: Manuscript received, 09 June 2020 // Manuscript accepted, 23 October 2020 // Accepted manuscript online, 31 October 2020 // Version of Record online,
22 December 2020.
Corresponding authors: Barbara Valent,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 633 | |
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