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 | Acceso al texto completo restringido a Biblioteca INIA La Estanzuela. Por información adicional contacte bib_le@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha : |
18/03/2020 |
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Actualizado : |
18/03/2020 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
PORTA, B; FERNANDEZ, P.; CONDON, F.; GALVÁN, G.A. |
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Afiliación : |
BETTINA PORTA, Universidad de la República, Facultad de Agronomía, Departamento de Biología Vegetal, 12900, Montevideo, Uruguay.; PETER DENNIS FERNANDEZ GRAF, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FEDERICO CONDON PRIANO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GUILLERMO A. GALVÁN, Universidad de la República, Facultad de Agronomía, Departamento de Producción Vegetal, Centro Regional Sur, 90100, Canelones, Uruguay. |
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Título : |
Gametes Simulator: a multilocus genotype simulator to analyze genetic structure in outbreeding diploid species. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Crop Breeding and Applied Biotechnology, v. 20, n.1 e26482019, 2020. http://dx.doi.org/10.1590/198470332020v20n1s9 |
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DOI : |
10.1590/198470332020v20n1s9 |
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Idioma : |
Inglés |
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Notas : |
Article history: .Received: 11 March 2019//Accepted: 31 October 2019//Published: 13 February 2020. Corresponding author: E-mail: bporta@fagro.edu.uy. ORCID: 0000-0001-6835-679X. |
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Contenido : |
Abstract: Bulk sampling and subsequent DNA fingerprinting are applied to obtain estimated allelic frequency data and unveil population structure for
outbreeding species. We developed Gametes Simulator, a routine to simulate gametes from allelic frequencies of unlinked loci, which enables the analysis of population structure through Bayesian analysis. Based on the allelic frequencies in the populations, the software simulates the alleles per population in the right proportions and assigns one allele per marker to each gamete following Mendel s laws that govern gametogenesis. |
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Palabras claves : |
ALLELIC FREQUENCIES; BULK SAMPLING; UNLINKED LOCI. |
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Thesagro : |
FITOMEJORAMIENTO. |
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Asunto categoría : |
-- |
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Marc : |
LEADER 01506naa a2200229 a 4500
001 1060930
005 2020-03-18
008 2020 bl uuuu u00u1 u #d
024 7 $a10.1590/198470332020v20n1s9$2DOI
100 1 $aPORTA, B
245 $aGametes Simulator$ba multilocus genotype simulator to analyze genetic structure in outbreeding diploid species.$h[electronic resource]
260 $c2020
500 $aArticle history: .Received: 11 March 2019//Accepted: 31 October 2019//Published: 13 February 2020. Corresponding author: E-mail: bporta@fagro.edu.uy. ORCID: 0000-0001-6835-679X.
520 $aAbstract: Bulk sampling and subsequent DNA fingerprinting are applied to obtain estimated allelic frequency data and unveil population structure for outbreeding species. We developed Gametes Simulator, a routine to simulate gametes from allelic frequencies of unlinked loci, which enables the analysis of population structure through Bayesian analysis. Based on the allelic frequencies in the populations, the software simulates the alleles per population in the right proportions and assigns one allele per marker to each gamete following Mendel s laws that govern gametogenesis.
650 $aFITOMEJORAMIENTO
653 $aALLELIC FREQUENCIES
653 $aBULK SAMPLING
653 $aUNLINKED LOCI
700 1 $aFERNANDEZ, P.
700 1 $aCONDON, F.
700 1 $aGALVÁN, G.A.
773 $tCrop Breeding and Applied Biotechnology$gv. 20, n.1 e26482019, 2020. http://dx.doi.org/10.1590/198470332020v20n1s9
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Registro original : |
INIA La Estanzuela (LE) |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha actual : |
10/07/2019 |
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Actualizado : |
10/07/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
BENÍTEZ-GALEANO, M.J.; VALLET, T.; CARRAU, L.; HERNÁNDEZ-RODRÍGUEZ, L.; BERTALMIO, A.; RIVAS, F.; RUBIO, L.; MAESO, D.; VIGNUZZI, M.; MORATORIO, G.; COLINA, R. |
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Afiliación : |
MARÍA JOSÉ BENÍTEZ-GALEANO, Laboratory of Molecular Virology, University of the Republic, Salto, Uruguay.; THOMAS VALLET, Institut Pasteur, Viral Populations and Pathogenesis, Centre National de la Recherche Scientifique, Paris, France; LUCÍA CARRAU, Institut Pasteur, Viral Populations and Pathogenesis, Centre National de la Recherche Scientifique, Paris, France; LESTER HERNÁNDEZ RODRÍGUEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.; ANA MARIA BERTALMIO CASARIEGO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS FERNANDO RIVAS GRELA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LETICIA PAOLA RUBIO CATTANI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; DIEGO CESAR MAESO TOZZI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARCO VIGNUZZI, Institut Pasteur, Viral Populations and Pathogenesis, Centre National de la Recherche Scientifique, Paris, France; GONZALO MORATORIO, Institut Pasteur, Viral Populations and Pathogenesis, Centre National de la Recherche Scientifique, Paris, France; RODNEY COLINA, Laboratory of Molecular Virology, University of the Republic, Salto, Uruguay. |
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Título : |
Complete genome sequence of a novel recombinant Citrus tristeza virus, a resistance-breaking isolate from Uruguay. |
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Fecha de publicación : |
2018 |
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Fuente / Imprenta : |
Genome Announcements, 1 May 2018, Volume 6, Issue 22, Article number e00442-18. OPEN ACCESS. |
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ISSN : |
2169-8287 |
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DOI : |
10.1128/genomeA.00442-18 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 19 April 2018 / Accepted 24 April / 2018 Published 31 May 2018.
Accession number(s). The genomic sequence for isolate CTV DSST-17 was deposited in GenBank under accession number MH186146. |
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Contenido : |
ABSTRACT.
We report here the complete genome sequence of a Citrus tristeza virus (CTV) from Uruguay, sequenced by using Illumina and Sanger sequencing technology. This CTV DSST-17 genome clustered within genotype resistance breaking (RB) and presents two recombination events.
© 2018 Benítez-Galeano et al. |
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Thesagro : |
CITRUS. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/13013/1/Genome-Announcements.-2018.-10.1128genomeA.00442-18.pdf
https://mra.asm.org/content/6/22/e00442-18
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Marc : |
LEADER 01386naa a2200289 a 4500
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005 2019-07-10
008 2018 bl uuuu u00u1 u #d
022 $a2169-8287
024 7 $a10.1128/genomeA.00442-18$2DOI
100 1 $aBENÍTEZ-GALEANO, M.J.
245 $aComplete genome sequence of a novel recombinant Citrus tristeza virus, a resistance-breaking isolate from Uruguay.$h[electronic resource]
260 $c2018
500 $aArticle history: Received 19 April 2018 / Accepted 24 April / 2018 Published 31 May 2018. Accession number(s). The genomic sequence for isolate CTV DSST-17 was deposited in GenBank under accession number MH186146.
520 $aABSTRACT. We report here the complete genome sequence of a Citrus tristeza virus (CTV) from Uruguay, sequenced by using Illumina and Sanger sequencing technology. This CTV DSST-17 genome clustered within genotype resistance breaking (RB) and presents two recombination events. © 2018 Benítez-Galeano et al.
650 $aCITRUS
700 1 $aVALLET, T.
700 1 $aCARRAU, L.
700 1 $aHERNÁNDEZ-RODRÍGUEZ, L.
700 1 $aBERTALMIO, A.
700 1 $aRIVAS, F.
700 1 $aRUBIO, L.
700 1 $aMAESO, D.
700 1 $aVIGNUZZI, M.
700 1 $aMORATORIO, G.
700 1 $aCOLINA, R.
773 $tGenome Announcements, 1 May 2018, Volume 6, Issue 22, Article number e00442-18. OPEN ACCESS.
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