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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha : |
30/11/2020 |
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Actualizado : |
05/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
WANG, X.; SILVA, P.; BELLO, N.M.; SINGH, D.; EVERS, B.; SINGH, R.P.; POLAND, J. |
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Afiliación : |
XU WANG, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.;Department of Plant Pathology, Kansas State University, Manhattan, KS, United States; Interdepartmental Genetics, Kansas State University, Manhattan, KS, United State; NORA M. BELLO, Department of Statistics, Kansas State University, Manhattan, KS, United States,; DALJIT SINGH, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; BYRON EVERS, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.; RAVI P. SINGH, Global Wheat Program, International Maize and Wheat Improvement Center, Mexico City, Mexico.; JESSE POLAND1, Department of Plant Pathology, Kansas State University, Manhattan, KS, United States. |
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Título : |
Improved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Frontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093 |
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DOI : |
10.3389/fpls.2020.587093 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020. |
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Contenido : |
The development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection. MenosThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial
images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-s... Presentar Todo |
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Palabras claves : |
CANOPY TEMPERATURE; GROUND COVER; HIGH-THROUGHPUT PHENOTYPING; NORMALIZED DIFFERENCE VEGETATION INDEX; UNMANNED AERIAL SYSTEMS; WHEAT. |
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Thesagro : |
TRIGO. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16703/1/fpls-11-587093.pdf
https://www.frontiersin.org/articles/10.3389/fpls.2020.587093/pdf
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Marc : |
LEADER 03406nam a2200289 a 4500
001 1061531
005 2022-09-05
008 2020 bl uuuu u0uu1 u #d
024 7 $a10.3389/fpls.2020.587093$2DOI
100 1 $aWANG, X.
245 $aImproved accuracy of high-throughput phenotyping from unmanned aerial systems by extracting traits directly from orthorectified images.$h[electronic resource]
260 $aFrontiers in Plant Science, 21 October 2020, Volume 11, Article number 587093. Open Access. Doi: https://doi.org/10.3389/fpls.2020.587093$c2020
500 $aArticle history: Received: 27 July 2020/ Accepted: 30 September 2020/Published: 21 October 2020.
520 $aThe development of high-throughput genotyping and phenotyping has provided access to many tools to accelerate plant breeding programs. Unmanned Aerial Systems (UAS)-based remote sensing is being broadly implemented for field-based highthroughput phenotyping due to its low cost and the capacity to rapidly cover large breeding populations. The Structure-from-Motion photogrammetry processes aerial images taken from multiple perspectives over a field to an orthomosaic photo of a complete field experiment, allowing spectral or morphological trait extraction from the canopy surface for each individual field plot. However, some phenotypic information observable in each raw aerial image seems to be lost to the orthomosaic photo,probably due to photogrammetry processes such as pixel merging and blending. To formally assess this, we introduced a set of image processing methods to extract phenotypes from orthorectified raw aerial images and compared them to the negative control of extracting the same traits from processed orthomosaic images. We predict that standard measures of accuracy in terms of the broad-sense heritability of the remote sensing spectral traits will be higher using the orthorectified photos than with the orthomosaic image. Using three case studies, we therefore compared the broadsense heritability of phenotypes in wheat breeding nurseries including, (1) canopy temperature from thermal imaging, (2) canopy normalized difference vegetation index (NDVI), and (3) early-stage ground cover from multispectral imaging. We evaluated heritability estimates of these phenotypes extracted from multiple orthorectified aerial images via four statistical models and compared the results with heritability estimates of these phenotypes extracted from a single orthomosaic image. Our results indicate that extracting traits directly from multiple orthorectified aerial images yielded increased estimates of heritability for all three phenotypes through proper modeling, compared to estimation using traits extracted from the orthomosaic image. In summary, the image processing methods demonstrated in this study have the potential to improve the quality of the plant trait extracted from high-throughput imaging. This, in turn, can enable breeders to utilize phenomics technologies more effectively for improved selection.
650 $aTRIGO
653 $aCANOPY TEMPERATURE
653 $aGROUND COVER
653 $aHIGH-THROUGHPUT PHENOTYPING
653 $aNORMALIZED DIFFERENCE VEGETATION INDEX
653 $aUNMANNED AERIAL SYSTEMS
653 $aWHEAT
700 1 $aSILVA, P.
700 1 $aBELLO, N.M.
700 1 $aSINGH, D.
700 1 $aEVERS, B.
700 1 $aSINGH, R.P.
700 1 $aPOLAND, J.
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Registro original : |
INIA La Estanzuela (LE) |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela; INIA Las Brujas. |
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Fecha actual : |
26/01/2021 |
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Actualizado : |
05/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
DALLA NORA, D.; BALARDIN, R. R.; KASPARY, T. E.; DE SOUZA JÚNIOR, I. T.; BELLÉ, C. |
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Afiliación : |
DAIANE DALLA NORA, Phytus Group, Estação experimental de Itaara, Itaara, Rio Grande do Sul, Brasil.; RICARDO RUBIN BALARDIN, Phytus Group, Estação experimental de Itaara, Itaara, Rio Grande do Sul, Brasil.; TIAGO EDU KASPARY, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ISMAIL TEODORO DE SOUZA JÚNIOR, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil.; CRISTIANO BELLÉ, Phytus Group, Estação experimental de Itaara, Itaara, Rio Grande do Sul, Brasil. |
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Título : |
Host status of soybean genotypes to Meloidogyne arenaria and Meloidogyne morocciensis. [Hospedabilidade de genótipos de soja a Meloidogyne arenaria e Meloidogyne morocciensis]. |
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Complemento del título : |
Section: Research Article - Science of Plants and Derived Products. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Revista de Ciências Agroveterinárias, 2020, vol. 19 (4), pp. 428-433. Doi: https://doi.org/10.5965/223811711942020428 |
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ISSN : |
eISSN 2238-1171 |
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DOI : |
10.5965/223811711942020428 |
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Idioma : |
Inglés |
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Notas : |
Article history: Submission: 19 March 2020; Acceptance: 01 July 2020.
Corresponding author: Cristinano Bellé - crbelle@gmail.com
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License. |
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Contenido : |
ABSTRACT.
Soybean crop productivity is limited by several biotic factors, particularly plant-parasitic nematodes. Several species have been reported to cause crop damage, especially those of the genus Meloidogyne. Therefore, the aim of this study was to evaluate, the reaction of 28 soybean genotypes to Meloidogyne arenaria and M. morocciensis in a greenhouse. The soybean genotypes were the same for experiments with different species of plant-parasitic nematodes and were individually inoculated with 5,000 eggs + second-stage juveniles (J2) of Meloidogyne and kept in a greenhouse. After 60 days of inoculation, the roots of each plant were assessed for the number of galls, final population, and reproduction factor (RF = final population/initial population). The averages of the different variables were then compared to each other by the Scott-Knott cluster analysis at a significance level of 5%. All of the soybean genotypes in the study were susceptible to both nematodes, with RF ranging from 3.5 to 24.1 for M. arenaria and 5.3 to 37.5 for M. morocciensis.
RESUMO.
A cultura da soja tem sua produtividade limitada por diversos fatores bióticos, dentre estes destacam-se os fitonematoides. Várias espécies já foram relatadas causando danos à cultura, especialmente as do gênero Meloidogyne. Diante disso, o objetivo do trabalho foi avaliar, em casa de vegetação, a reação de 28 cultivares de soja a M. arenaria e M. morocciensis. As cultivares de soja testadas foram as mesmas para os dois ensaios, sendo individualmente inoculadas com 5.000 ovos + juvenis do segundo estádio (J2) de Meloidogyne mantidas em casa de vegetação. Decorridos 60 dias da inoculação, as raízes de cada planta foram avaliadas quanto ao número de galhas, população final e fator de reprodução (FR = população final/população inicial). A seguir, as médias das diferentes variáveis foram comparadas entre si pelo teste de agrupamento de Scott e Knott a 5%. Todas as cultivares de soja avaliadas comportaram-se como suscetíveis a ambos nematoides, com FR variando 3,5 a 24,1 para M. arenaria, e de 5,3 a 37,5 para o M. morocciensis. MenosABSTRACT.
Soybean crop productivity is limited by several biotic factors, particularly plant-parasitic nematodes. Several species have been reported to cause crop damage, especially those of the genus Meloidogyne. Therefore, the aim of this study was to evaluate, the reaction of 28 soybean genotypes to Meloidogyne arenaria and M. morocciensis in a greenhouse. The soybean genotypes were the same for experiments with different species of plant-parasitic nematodes and were individually inoculated with 5,000 eggs + second-stage juveniles (J2) of Meloidogyne and kept in a greenhouse. After 60 days of inoculation, the roots of each plant were assessed for the number of galls, final population, and reproduction factor (RF = final population/initial population). The averages of the different variables were then compared to each other by the Scott-Knott cluster analysis at a significance level of 5%. All of the soybean genotypes in the study were susceptible to both nematodes, with RF ranging from 3.5 to 24.1 for M. arenaria and 5.3 to 37.5 for M. morocciensis.
RESUMO.
A cultura da soja tem sua produtividade limitada por diversos fatores bióticos, dentre estes destacam-se os fitonematoides. Várias espécies já foram relatadas causando danos à cultura, especialmente as do gênero Meloidogyne. Diante disso, o objetivo do trabalho foi avaliar, em casa de vegetação, a reação de 28 cultivares de soja a M. arenaria e M. morocciensis. As cultivares de soja testadas f... Presentar Todo |
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Palabras claves : |
Nematoide-das-galhas; Reprodução; Reproduction; Root-knot nematode; Susceptibility; Suscetibilidade. |
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Thesagro : |
GLYCINE MAX. |
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Asunto categoría : |
F01 Cultivo |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16694/1/17223-Manuscrito-Completo-Obrigatorio-70067-1-10-20201204.pdf
https://periodicos.udesc.br/index.php/agroveterinaria/article/view/17223/12338
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Marc : |
LEADER 03433naa a2200289 a 4500
001 1061679
005 2022-09-05
008 2020 bl uuuu u00u1 u #d
022 $aeISSN 2238-1171
024 7 $a10.5965/223811711942020428$2DOI
100 1 $aDALLA NORA, D.
245 $aHost status of soybean genotypes to Meloidogyne arenaria and Meloidogyne morocciensis. [Hospedabilidade de genótipos de soja a Meloidogyne arenaria e Meloidogyne morocciensis].$h[electronic resource]
260 $c2020
500 $aArticle history: Submission: 19 March 2020; Acceptance: 01 July 2020. Corresponding author: Cristinano Bellé - crbelle@gmail.com This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
520 $aABSTRACT. Soybean crop productivity is limited by several biotic factors, particularly plant-parasitic nematodes. Several species have been reported to cause crop damage, especially those of the genus Meloidogyne. Therefore, the aim of this study was to evaluate, the reaction of 28 soybean genotypes to Meloidogyne arenaria and M. morocciensis in a greenhouse. The soybean genotypes were the same for experiments with different species of plant-parasitic nematodes and were individually inoculated with 5,000 eggs + second-stage juveniles (J2) of Meloidogyne and kept in a greenhouse. After 60 days of inoculation, the roots of each plant were assessed for the number of galls, final population, and reproduction factor (RF = final population/initial population). The averages of the different variables were then compared to each other by the Scott-Knott cluster analysis at a significance level of 5%. All of the soybean genotypes in the study were susceptible to both nematodes, with RF ranging from 3.5 to 24.1 for M. arenaria and 5.3 to 37.5 for M. morocciensis. RESUMO. A cultura da soja tem sua produtividade limitada por diversos fatores bióticos, dentre estes destacam-se os fitonematoides. Várias espécies já foram relatadas causando danos à cultura, especialmente as do gênero Meloidogyne. Diante disso, o objetivo do trabalho foi avaliar, em casa de vegetação, a reação de 28 cultivares de soja a M. arenaria e M. morocciensis. As cultivares de soja testadas foram as mesmas para os dois ensaios, sendo individualmente inoculadas com 5.000 ovos + juvenis do segundo estádio (J2) de Meloidogyne mantidas em casa de vegetação. Decorridos 60 dias da inoculação, as raízes de cada planta foram avaliadas quanto ao número de galhas, população final e fator de reprodução (FR = população final/população inicial). A seguir, as médias das diferentes variáveis foram comparadas entre si pelo teste de agrupamento de Scott e Knott a 5%. Todas as cultivares de soja avaliadas comportaram-se como suscetíveis a ambos nematoides, com FR variando 3,5 a 24,1 para M. arenaria, e de 5,3 a 37,5 para o M. morocciensis.
650 $aGLYCINE MAX
653 $aNematoide-das-galhas
653 $aReprodução
653 $aReproduction
653 $aRoot-knot nematode
653 $aSusceptibility
653 $aSuscetibilidade
700 1 $aBALARDIN, R. R.
700 1 $aKASPARY, T. E.
700 1 $aDE SOUZA JÚNIOR, I. T.
700 1 $aBELLÉ, C.
773 $tRevista de Ciências Agroveterinárias, 2020, vol. 19 (4), pp. 428-433. Doi: https://doi.org/10.5965/223811711942020428
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