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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
14/09/2023 |
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Actualizado : |
14/09/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
GIORELLO, F.M.; FARIAS, J.; BASILE, P.; BALMELLI, G.; DA SILVA, C.C. |
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Afiliación : |
FACUNDO M. GIORELLO, Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Uruguay; JOAQUINA FARIAS, Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Uruguay; PATRICIA BASILE, Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Urugu; GUSTAVO DANIEL BALMELLI HERNANDEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CECILIA CORINA DA SILVA, Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Uruguay. |
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Título : |
Evaluating the potential of XP-GWAS in Eucalyptus: Leaf heteroblasty as a case study. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Plant Gene. December 2023, Volume 36, article 100430. https://doi.org/10.1016/j.plgene.2023.100430 |
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ISSN : |
2352-4073 |
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DOI : |
10.1016/j.plgene.2023.100430 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 3 February 2023, Revised 24 July 2023, Accepted 11 August 2023, Available online 22 August 2023, Version of Record 31 August 2023. -- Correspondence: Giorello, F.M.; Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Uruguay; email:facundo.giorello@cut.edu.uy -- FUNDING: This work was supported by grant of the Ministerio de Educación y Cultura, Uruguay (Fondo Vaz Ferreira 173, DICyT, MEC). -- |
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Contenido : |
ABSTRACT.- Eucalyptus is one of the mainstays of the forest industry, contributing high-quality raw materials for pulp, paper, wood, and energy production. The typical approaches to reveal the genetic basis of important traits include classical Quantitative Trait Locus (QTL) mapping and Genome-Wide Association Studies (GWAS) approaches, but these are typically expensive and time-consuming. Here we evaluate the potential of Extreme-Phenotype GWAS (XP-GWAS) to identify candidate genes underlying a quantitative trait in Eucalyptus, using the timing of leaf heteroblasty as a case study. XP-GWAS involves genotyping pools of individuals grouped by extreme and opposed phenotypes from a population or a diversity panel and studying their allele frequency. Using a previous phenotyped trial of E. globulus, we sequenced pools of 50 individuals that notably differ in the onset of adult foliage. Since the genetic basis of heteroblasty is well understood, we first searched for previously identified genes. Secondly, we searched for new candidate genes and also evaluated the copy number variation (CNVs) that may be involved in this process. We found marginally significant SNPs associated with previously described microRNAs, and interesting new non-coding RNAs. Disease resistance genes were also uncovered, probably as a consequence of indirectly selecting resistant trees, although a possible interaction between resistance and heteroblasty cannot be disregarded either. Our work shows the utility and limitations of XP-GWAS analysis to explore the genetic basis of Eucalyptus. © 2023 Elsevier B.V. MenosABSTRACT.- Eucalyptus is one of the mainstays of the forest industry, contributing high-quality raw materials for pulp, paper, wood, and energy production. The typical approaches to reveal the genetic basis of important traits include classical Quantitative Trait Locus (QTL) mapping and Genome-Wide Association Studies (GWAS) approaches, but these are typically expensive and time-consuming. Here we evaluate the potential of Extreme-Phenotype GWAS (XP-GWAS) to identify candidate genes underlying a quantitative trait in Eucalyptus, using the timing of leaf heteroblasty as a case study. XP-GWAS involves genotyping pools of individuals grouped by extreme and opposed phenotypes from a population or a diversity panel and studying their allele frequency. Using a previous phenotyped trial of E. globulus, we sequenced pools of 50 individuals that notably differ in the onset of adult foliage. Since the genetic basis of heteroblasty is well understood, we first searched for previously identified genes. Secondly, we searched for new candidate genes and also evaluated the copy number variation (CNVs) that may be involved in this process. We found marginally significant SNPs associated with previously described microRNAs, and interesting new non-coding RNAs. Disease resistance genes were also uncovered, probably as a consequence of indirectly selecting resistant trees, although a possible interaction between resistance and heteroblasty cannot be disregarded either. Our work shows the utili... Presentar Todo |
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Palabras claves : |
Heteroblasty; MiR156; SISTEMA FORESTAL - INIA; XP-GWAS. |
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Thesagro : |
EUCALYPTUS GLOBULUS. |
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Asunto categoría : |
K01 Ciencias forestales - Aspectos generales |
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Marc : |
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022 $a2352-4073
024 7 $a10.1016/j.plgene.2023.100430$2DOI
100 1 $aGIORELLO, F.M.
245 $aEvaluating the potential of XP-GWAS in Eucalyptus$bLeaf heteroblasty as a case study.$h[electronic resource]
260 $c2023
500 $aArticle history: Received 3 February 2023, Revised 24 July 2023, Accepted 11 August 2023, Available online 22 August 2023, Version of Record 31 August 2023. -- Correspondence: Giorello, F.M.; Espacio de Biología Vegetal del Noreste, Centro Universitario Regional Noreste, sede Tacuarembó, Universidad de la República, Tacuarembó, Uruguay; email:facundo.giorello@cut.edu.uy -- FUNDING: This work was supported by grant of the Ministerio de Educación y Cultura, Uruguay (Fondo Vaz Ferreira 173, DICyT, MEC). --
520 $aABSTRACT.- Eucalyptus is one of the mainstays of the forest industry, contributing high-quality raw materials for pulp, paper, wood, and energy production. The typical approaches to reveal the genetic basis of important traits include classical Quantitative Trait Locus (QTL) mapping and Genome-Wide Association Studies (GWAS) approaches, but these are typically expensive and time-consuming. Here we evaluate the potential of Extreme-Phenotype GWAS (XP-GWAS) to identify candidate genes underlying a quantitative trait in Eucalyptus, using the timing of leaf heteroblasty as a case study. XP-GWAS involves genotyping pools of individuals grouped by extreme and opposed phenotypes from a population or a diversity panel and studying their allele frequency. Using a previous phenotyped trial of E. globulus, we sequenced pools of 50 individuals that notably differ in the onset of adult foliage. Since the genetic basis of heteroblasty is well understood, we first searched for previously identified genes. Secondly, we searched for new candidate genes and also evaluated the copy number variation (CNVs) that may be involved in this process. We found marginally significant SNPs associated with previously described microRNAs, and interesting new non-coding RNAs. Disease resistance genes were also uncovered, probably as a consequence of indirectly selecting resistant trees, although a possible interaction between resistance and heteroblasty cannot be disregarded either. Our work shows the utility and limitations of XP-GWAS analysis to explore the genetic basis of Eucalyptus. © 2023 Elsevier B.V.
650 $aEUCALYPTUS GLOBULUS
653 $aHeteroblasty
653 $aMiR156
653 $aSISTEMA FORESTAL - INIA
653 $aXP-GWAS
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700 1 $aBASILE, P.
700 1 $aBALMELLI, G.
700 1 $aDA SILVA, C.C.
773 $tPlant Gene. December 2023, Volume 36, article 100430. https://doi.org/10.1016/j.plgene.2023.100430
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INIA Las Brujas (LB) |
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| 21. |  | CIBILS-STEWART, X.; CALISTRO, P.; BARAIBAR, N.; GIAMBIASI, M.; GIANNITTI, F.; MACHADO, M.; SILVEIRA, C.S.; MENCHACA, A.; CAFFARENA, D.; SARAVIA, A. Escarabajo siete de oro (Astylus atromaculatus): actualización y recomendaciones en vísperas del verano 2024. Producción animal. Revista INIA Uruguay, Diciembre 2023, no.75 p.35-39. (Revista INIA; 75).| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Las Brujas. |
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| 22. | | CRISPO, M.; CHENOUARD, V.; DOS SANTOS-NETO P; TESSON, L.; SOUZA-NEVES, M.; HESLAN, J.M.; CUADRO, F.; ANEGÓN, I.; MENCHACA, A. Generation of a Human Deafness Sheep Model Using the CRISPR/Cas System. Chapter 12. Methods in Molecular Biology, 2022, Volume 2495, Pages 233-258. doi: https://doi.org/10.1007/978-1-0716-2301-5_12| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA La Estanzuela. |
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| 23. | | MACHADO, M.; MARTÍNEZ, R.; ANDRES, S.; SUMARAH, M.W.; RENAUD, J.B.; ARMIÉN, A.G.; BARROS, C.S.L.; RIET-CORREA, F.; MENCHACA, A.; SCHILD, C. Poisoning by Baccharis coridifolia in early-weaned beef calves: pathological study and new macrocyclic trichothecene identification. Toxins. 2023; 15(12):681. https://doi.org/10.3390/toxins15120681 -- OPEN ACCESS. Article history: Submission received: 19 October 2023; Revised: 20 November 2023; Accepted: 27 November 2023; Published: 1 December 2023. -- Supplementary Materials: The following supporting information can be downloaded at:...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 24. | | GIANNITTI, F.; MACHADO, M.; SILVEIRA, C.S.; CIBILS-STEWART, X.; BARAIBAR, N.; QUEIROZ-MACHADO, C.R.R.; POPPENGA, R.H.; MENCHACA, A.; UZAL, F.A.; GARCÍA, J.A.; MATTO, C.; DUTRA, F.; RUPRECHTER, G.; CAFFARENA, D.; SARAVIA, A. Experimental oral administration of pollen beetle (Astylus atromaculatus) to cattle results in an acute lethal gastrointestinal disease. Research article. Veterinary Pathology. 2024. https://doi.org/10.1177/03009858241231557 -- [In Press] Article history: First published online March 4, 2024. -- Correspondence: Federico Giannitti, Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, Estación Experimental La Estanzuela, Ruta 50 km...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 25. | | FRESIA, P.; PIMENTEL, S.; IRIARTE, V.; MARQUES, L.; DURÁN, V.; SARAVIA, A.; NOVAS, R.; BASIKA, T.; FERENCZI, A.; CASTELLS, D.; SAPORITI, T.; CUORE, U.; LOSIEWICZ, S.; FERNÁNDEZ, F.; CIAPPESONI, G.; DALLA RIZZA, M.; MENCHACA, A. Historical perspective and new avenues to control the myiasis-causing fly Cochliomyia hominivorax in Uruguay. [Perspectiva histórica y nuevas opciones para el control de la mosca de la bichera Cochliomyia hominivorax en Uruguay]. [Perspectiva histórica e novas opções para o controle da mosca da bicheira Cochliomyia hominivoraxno Uruguai. Animal production and pastures. Agrociencia Uruguay, 2021, vol. 25, n.2, article E974. DOI: https://doi.org/10.31285/AGRO.25.974 Article history: Received 23 Sep 2021; Accepted 07 Oct 2021; Published 18 Nov 2021.
Editor: Milka Ferrer, Universidad de la República, Facultad de Agronomía, Montevideo, Uruguay.
Correspondence: Pablo Fresia, mail: pfresia@pasteur.edu.uy| Tipo: Artículos en Revistas Indexadas Nacionales | Circulación / Nivel : Nacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 26. | | RODRIGUES, G. D.; LUCAS, M.; ORTIZ, H. G.; SANTOS GONÇALVES, L. DOS; BLODORN, E.; DOMINGUES, W. B.; NUNES, L. S.; SARAVIA, A.; PARODI, P.; RIET-CORREA, F.; MENCHACA, A.; CAMPOS, C. V.; KROLOW, T. K.; KRÜGER, R. F. Molecular of Anaplasma marginale Theiler (Rickettsiales: Anaplasmataceae) in horseflies (Diptera: Tabanidae) in Uruguay. Scientific Reports, 2022, volume 12, issue 1, article 22460. OPEN ACCESS. doi: https://doi.org/10.1038/s41598-022-27067-0 Article history: Received 11 July 2022; Accepted 23 December 2022; Published 28 December 2022. -- Corresponding author: Rodrigues, G.D.; Ecology of Parasites and Vectors Group, Universidade Federal de Pelotas, Rio Grande do Sul, Brazil;...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 27. | | PASSOS, J. R. S.; GUERREIRO, D. D.; OTÁVIO, K. S.; SANTOS-NETO, P. C. DOS; SOUZA-NEVES, M.; CUADRO, F.; NUÑEZ-OLIVERA, R.; CRISPO, M.; BEZERRA, M. J. B.; SILVA, R. F.; LIMA, L. F.; FIGUEIREDO, J. R.; BUSTAMANTE-FILHO, I. C.; MENCHACA, A.; MOURA, A. A. Global proteomic analysis of preimplantational ovine embryos produced in vitro. Reproduction in Domestic Animals, 2022, Volume 57, Issue 7; pages 784-797. doi: https://doi.org/10.1111/rda.14122 Article history: Received 15 February 2022; Accepted 1 April 2022. -- Funding text - The experiments presently described were conducted at the facilities of the (Fundacion IRAUy, Montevideo, Uruguay) and at the (UBAL) of the , Uruguay....| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 28. | | PASSOS, J.R.S.; GUERREIRO, D.D.; KAMILA S. OTÁVIO; DOS SANTOS-NETO, P.C.; SOUZA-NEVES, M.; CUADRO, F.; NUÑEZ?OLIVERA, R.; CRISPO, M.; VASCONCELOS, F.R.; BEZERRA, M.J.B.; SILVA, R.F.; LIMA, L.F.; FIGUEIREDO, J.R.; BUSTAMANTE-FILHO, I.C.; MENCHACA, A.; MOURA, A.A. How in vitro maturation changes the proteome of ovine cumulus-oocyte complexes?. Volume 89, Issue 10, Pages 459 - 470October 2022 Molecular reproduction and development, October 2022, Volume 89, Issue 10, pages 459-470. doi: https://doi.org/10.1002/mrd.23638 Article history: Received: 16 February 2022 | Accepted: 21 July 2022. -- Corresponding author: Moura, A.A.; Laboratory of Animal Physiology, Department of Animal Science, Federal University of Ceará, Fortaleza, Brazil;...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA La Estanzuela. |
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| Registros recuperados : 28 | |
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