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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
29/04/2015 |
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Actualizado : |
15/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
GRASSO, A.; GOLDBERG, V.; NAVAJAS, E.; IRIARTE, W.; GIMENO, D.; AGUILAR, I.; MEDRANO, J.F.; RINCÓN, G.; CIAPPESONI, G. |
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Afiliación : |
ANDRES NICOLAS GRASSO PALAS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; VIRGINIA GOLDBERG BIANCHI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ELLY ANA NAVAJAS VALENTINI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; WANDA IRIARTE GRECO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; DIEGO GIMENO, SUL (Secretariado Uruguayo de la Lana).; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN F. MEDRANO, Universidad de California Davis (UCD); GONZALO RINCÓN, Universidad de California Davis (UCD); CARLOS GABRIEL CIAPPESONI SCARONE, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep. |
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Fecha de publicación : |
2014 |
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Fuente / Imprenta : |
Genetics and Molecular Biology, 2014, v.37, n.2, p.389-395. |
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DOI : |
10.1590/S1415-47572014000300011 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: August 29, 2013 / Accepted: March 16, 2014. |
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Contenido : |
ABSTRACT.
The aim of this study was to investigate the genetic diversity within and among three breeds of sheep: Corriedale, Merino and Creole. Sheep from the three breeds (Merino n = 110, Corriedale n = 108 and Creole n = 10) were genotyped using the Illumina Ovine SNP50 beadchip®
. Genetic diversity was evaluated by comparing the minor allele frequency (MAF) among breeds. Population structure and genetic differentiation were assessed using STRUCTURE software, principal component analysis (PCA) and fixation index (FST). Fixed markers (MAF = 0) that were different
among breeds were identified as specific breed markers. Using a subset of 18,181 single nucleotide polymorphisms (SNPs), PCA and STUCTURE analysis were able to explain population stratification within breeds. Merino and Corriedale divergent lines showed high levels of polymorphism (89.4% and 86% of polymorphic SNPs, respectively) and moderate genetic differentiation (FST = 0.08) between them. In contrast, Creole had only 69% polymorphic SNPs and
showed greater genetic differentiation from the other two breeds (FST = 0.17 for both breeds). Hence, a subset of molecular markers present in the OvineSNP50 is informative enough for breed assignment and population structure analysis of commercial and Creole breeds. |
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Palabras claves : |
OVINE SNP50. |
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Thesagro : |
DIVERSIDAD GENETICA; OVEJA; OVINOS; RAZAS (ANIMALES). |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/4414/1/Grasso-N.-2014.-Genetcs-and-Mol.Biol.v37n2.pdf
http://www.scielo.br/pdf/gmb/v37n2/a11v37n2.pdf
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Marc : |
LEADER 02237naa a2200301 a 4500
001 1052592
005 2019-10-15
008 2014 bl uuuu u00u1 u #d
024 7 $a10.1590/S1415-47572014000300011$2DOI
100 1 $aGRASSO, A.
245 $aGenomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep.$h[electronic resource]
260 $c2014
500 $aArticle history: Received: August 29, 2013 / Accepted: March 16, 2014.
520 $aABSTRACT. The aim of this study was to investigate the genetic diversity within and among three breeds of sheep: Corriedale, Merino and Creole. Sheep from the three breeds (Merino n = 110, Corriedale n = 108 and Creole n = 10) were genotyped using the Illumina Ovine SNP50 beadchip® . Genetic diversity was evaluated by comparing the minor allele frequency (MAF) among breeds. Population structure and genetic differentiation were assessed using STRUCTURE software, principal component analysis (PCA) and fixation index (FST). Fixed markers (MAF = 0) that were different among breeds were identified as specific breed markers. Using a subset of 18,181 single nucleotide polymorphisms (SNPs), PCA and STUCTURE analysis were able to explain population stratification within breeds. Merino and Corriedale divergent lines showed high levels of polymorphism (89.4% and 86% of polymorphic SNPs, respectively) and moderate genetic differentiation (FST = 0.08) between them. In contrast, Creole had only 69% polymorphic SNPs and showed greater genetic differentiation from the other two breeds (FST = 0.17 for both breeds). Hence, a subset of molecular markers present in the OvineSNP50 is informative enough for breed assignment and population structure analysis of commercial and Creole breeds.
650 $aDIVERSIDAD GENETICA
650 $aOVEJA
650 $aOVINOS
650 $aRAZAS (ANIMALES)
653 $aOVINE SNP50
700 1 $aGOLDBERG, V.
700 1 $aNAVAJAS, E.
700 1 $aIRIARTE, W.
700 1 $aGIMENO, D.
700 1 $aAGUILAR, I.
700 1 $aMEDRANO, J.F.
700 1 $aRINCÓN, G.
700 1 $aCIAPPESONI, G.
773 $tGenetics and Molecular Biology, 2014$gv.37, n.2, p.389-395.
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INIA Las Brujas (LB) |
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| Registros recuperados : 8 | |
| 3. |  | RAVAGNOLO, O.; BRANDA, A.; BRITO, G.; CIAPPESONI, G.; RINCÓN, G.; LA MANNA, A.; BANCHERO, G. Descripción de información de un panel de SNP para carne en .engorde de novillos Hereford. ln: INIA TACUAREMBÓ. INSTITUTO NACIONAL DE CARNES. Calidad de carnes. SEMINARIO DE ACTUALIZACIÓN TÉCNICA, 20-21 de setiembre, Tacuarembó, 2010. Montevideo (Uruguay): INIA, 2010.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Tacuarembó. |
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| 4. | | PERAZA, P.; RINCÓN, G.; SOTELO-SILVEIRA, J.; CIAPPESONI, G.; ISLAS-TREJO, A.; MEDRANO, J.F. Estudio mediante RNA-SEQ del transcriptoma de diferentes tejidos de ovinos resistentes y susceptibles a parásitos gastrointestinales. GGM 16 - COMUNICACIONES LIBRES - GGM. GENÓMICA Y GENÉTICA MOLECULAR In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016. p. 262| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 5. | | GRASSO, A.; GOLDBERG, V.; IRIARTE, W.; GIMENO,D.; CASTELLS, D.; RINCON, G.; NAVAJAS, E.; CIAPPESONI, G. Nuevas herramientas moleculares para la selección en ovinos: ejemplo de caso resistencia a parásitos gastrointestinales ln: Jornada técnica, VI Jornada de agrobiotecnología. INIA Las Brujas, 20 de octubre de 2012 Conocimiento intensivo para el sector productivo: situación actual y perspectivas. Canelones (UY): INIA, 2012. 7-9 (Serie Actividades de Difusión; 698)| Tipo: Actividades de Difusión |
| Biblioteca(s): INIA Las Brujas. |
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| 6. | | GRASSO, A.; GOLDBERG, V.; NAVAJAS, E.; IRIARTE, W.; GIMENO, D.; AGUILAR, I.; MEDRANO, J.F.; RINCÓN, G.; CIAPPESONI, G. Genomic variation and population structure detected by single nucleotide polymorphism arrays in Corriedale, Merino and Creole sheep. Genetics and Molecular Biology, 2014, v.37, n.2, p.389-395. Article history: Received: August 29, 2013 / Accepted: March 16, 2014.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : B - 1 |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | BRANDA, A.; RAVAGNOLO, O.; BRITO, G.; BALDI, F.; LA MANNA, A.; BANCHERO, G.; NAVAJAS, E.; MONTOSSI, F.; RINCÓN, G. Evaluación de un panel de marcadores en genes candidatos de vías metabólicas en engorde de novillos Hereford. ln: Jornada técnica, VI Jornada de agrobiotecnología. INIA Las Brujas, 20 de octubre de 2012 Conocimiento intensivo para el sector productivo: situación actual y perspectivas. Canelones (UY): INIA, 2012. 24-25 (Serie Actividades de Difusión; 698)| Tipo: Actividades de Difusión |
| Biblioteca(s): INIA Las Brujas. |
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| 8. | | BRANDA, A.; RAVAGNOLO, O.; BRITO, G.; BALDI, F.; LA MANNA, A.; BANCHERO, G.; NAVAJAS, E.; RINCON, G.; MEDRANO, J.F. Evaluation of panel SNP in metabolic pathways candidate genes for meat in hereford. [Evaluación de panel SNP en genes candidatos de vías metabólicas para carne en hereford.] Archivos de Zootecnia, 2014, v.63, no.241, p.73-84. OPEN ACCESS Article history: Recibido 12 noviembre 2012 // Aceptado 25 setiembre 2013.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : B - 2 |
| Biblioteca(s): INIA La Estanzuela; INIA Las Brujas. |
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| Registros recuperados : 8 | |
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