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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
26/04/2023 |
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Actualizado : |
19/06/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
REBOLLO, I.; SCHEFFEL, S.; BLANCO, P.H.; MOLINA, F.; MARTÍNEZ, S.; CARRACELAS, G.; AGUILAR, I.; PÉREZ DE VIDA, F.; ROSAS, J.E. |
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Afiliación : |
MARÍA INÉS REBOLLO PANUNCIO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay; SHEILA SCHEFFEL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FEDERICO MOLINA CASELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SEBASTIÁN MARTÍNEZ KOPP, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JULIO GONZALO CARRACELAS GARRIDO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay. |
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Título : |
Consolidating twenty-three years of historical data from an irrigated subtropical rice breeding program in Uruguay. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Crop Science, 2023. https://doi.org/10.1002/csc2.20955 - [Article in Press]. |
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ISSN : |
1435-0653 |
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DOI : |
10.1002/csc2.20955 |
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Idioma : |
Inglés |
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Notas : |
Article history: First published 15 March 2023. -- Corresponding author: jrosas@inia.org.uy -- |
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Contenido : |
Breeding programs generate vast amount of data which are often scattered in separate files. This hinders the application of modern breeding tools such as multi-environment analyses and genomic selection. This research work describes the process of consolidating 23 years of phenotypic, pedigree, and genomic records from the Uruguayan national rice (Oryza sativa L.) breeding program, and the features and structure of the resulting database. Using a custom-made R code, we gathered all the available data from 1997 to 2020 corresponding to field trials, blast disease evaluation nurseries, laboratory analyses of milling and cooking quality, pedigree information, and genomic information for selected advanced breeding lines, and organized it into a relational database. Records of 996 trials in 12 locations over a span of 23 years, 91,636 field plots with information on 14 phenotypic variables, pedigree for 19,447 genotypes, and genomic information regarding 61,260 single nucleotide polymorphism (SNP) markers for 965 genotypes were recovered. The dataset is structured in trials, phenotypes, lines, genomic information, and SNP tables in an easy-to-access relational database, which will be a valuable resource for rice breeding. © 2023 American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America |
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Palabras claves : |
Breeding program; Breeding trials; Phenotypic data. |
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Thesagro : |
ORYZA SATIVA L. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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Marc : |
LEADER 02322naa a2200301 a 4500
001 1064059
005 2023-06-19
008 2023 bl uuuu u00u1 u #d
022 $a1435-0653
024 7 $a10.1002/csc2.20955$2DOI
100 1 $aREBOLLO, I.
245 $aConsolidating twenty-three years of historical data from an irrigated subtropical rice breeding program in Uruguay.$h[electronic resource]
260 $c2023
500 $aArticle history: First published 15 March 2023. -- Corresponding author: jrosas@inia.org.uy --
520 $aBreeding programs generate vast amount of data which are often scattered in separate files. This hinders the application of modern breeding tools such as multi-environment analyses and genomic selection. This research work describes the process of consolidating 23 years of phenotypic, pedigree, and genomic records from the Uruguayan national rice (Oryza sativa L.) breeding program, and the features and structure of the resulting database. Using a custom-made R code, we gathered all the available data from 1997 to 2020 corresponding to field trials, blast disease evaluation nurseries, laboratory analyses of milling and cooking quality, pedigree information, and genomic information for selected advanced breeding lines, and organized it into a relational database. Records of 996 trials in 12 locations over a span of 23 years, 91,636 field plots with information on 14 phenotypic variables, pedigree for 19,447 genotypes, and genomic information regarding 61,260 single nucleotide polymorphism (SNP) markers for 965 genotypes were recovered. The dataset is structured in trials, phenotypes, lines, genomic information, and SNP tables in an easy-to-access relational database, which will be a valuable resource for rice breeding. © 2023 American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America
650 $aORYZA SATIVA L
653 $aBreeding program
653 $aBreeding trials
653 $aPhenotypic data
700 1 $aSCHEFFEL, S.
700 1 $aBLANCO, P.H.
700 1 $aMOLINA, F.
700 1 $aMARTÍNEZ, S.
700 1 $aCARRACELAS, G.
700 1 $aAGUILAR, I.
700 1 $aPÉREZ DE VIDA, F.
700 1 $aROSAS, J.E.
773 $tCrop Science, 2023. https://doi.org/10.1002/csc2.20955 - [Article in Press].
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INIA Las Brujas (LB) |
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| Acceso al texto completo restringido a Biblioteca INIA Treinta y Tres. Por información adicional contacte bibliott@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha actual : |
28/06/2019 |
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Actualizado : |
11/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
-- - -- |
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Autor : |
MARTÍNEZ, S.; NAKASONE, K.K.; BETTUCCI, L. |
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Afiliación : |
SEBASTIÁN MARTÍNEZ KOPP, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; KAREN K. NAKASONE, Center for Forest Mycology Research, Northern Research Station, USA.; LINA BETTUCCI, Laboratorio de Micología, Facultad de Ciencias, UdelaR, Montevideo. |
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Título : |
Diversity of wood-inhabiting Agaricomycotina on wood of different size classes in riparian forests of Uruguay. |
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Fecha de publicación : |
2019 |
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Fuente / Imprenta : |
Mycoscience, 2019, no.60, p.156-164. |
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DOI : |
10.1016/j.myc.2019.02.001 |
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Idioma : |
Inglés |
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Notas : |
Article history: Receibed 5 October 2018// Receibed in revised form 24 January 2019 // Accepted 5 February 2019 // Available online 6 February 2019. |
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Contenido : |
Many Agaricomycotina species are saprobes, playing a fundamental role in nutrient cycling in forest ecosystems by decomposing wood. Little is known about factors affecting diversity of wood-inhabiting fungi in the neotropical, warm temperate native forests of Uruguay. Most of these native forests are riparian harboring about 300 tree species. In this study, we assessed the diversity of wood-inhabiting fungi on wood of different size classes in riparian forests of Uruguay. We recovered 186 species of Agaricomycotina, including 113 corticioid and 58 polyporoid taxa. Eleven taxa accounted for 38% of the all the samples. The highest number of species was found on fine woody debris (FWD, 2e10 cm diam) than coarse woody debris (CWD, >10 cm diam) and very fine woody debris (VFWD, <2 cm diam).
Species-accumulation curves did not reach an asymptote for any of the groups or wood diameter classes studied. Polyporoids were more frequently recorded on CWD (61% of collections) and corticioids on VFWD (77%). Species richness estimated by non-parametric estimators indicates an Agaricomycotina species richness between 450 and 700 taxa. Our results show that Uruguayan riparian forests, despite its limited area and fragmentation, support a wood-inhabiting Agaricomycotina diversity comparable to less fragmented forests with more plant diversity. |
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Palabras claves : |
AGARICOMYCETES; BOSQUE RIBEREÑO; BOSQUES NATIVOS; CORTICIACEAE; FUNGAL DIVERSITY; HONGOS DE LA MADERA; POLYPORACEAE; URUGUAY; WARM TEMPERATURE FOREST. |
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Thesagro : |
HONGOS. |
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Asunto categoría : |
H20 Enfermedades de las plantas |
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Marc : |
LEADER 02322naa a2200289 a 4500
001 1059926
005 2019-10-11
008 2019 bl uuuu u00u1 u #d
024 7 $a10.1016/j.myc.2019.02.001$2DOI
100 1 $aMARTÍNEZ, S.
245 $aDiversity of wood-inhabiting Agaricomycotina on wood of different size classes in riparian forests of Uruguay.$h[electronic resource]
260 $c2019
500 $aArticle history: Receibed 5 October 2018// Receibed in revised form 24 January 2019 // Accepted 5 February 2019 // Available online 6 February 2019.
520 $aMany Agaricomycotina species are saprobes, playing a fundamental role in nutrient cycling in forest ecosystems by decomposing wood. Little is known about factors affecting diversity of wood-inhabiting fungi in the neotropical, warm temperate native forests of Uruguay. Most of these native forests are riparian harboring about 300 tree species. In this study, we assessed the diversity of wood-inhabiting fungi on wood of different size classes in riparian forests of Uruguay. We recovered 186 species of Agaricomycotina, including 113 corticioid and 58 polyporoid taxa. Eleven taxa accounted for 38% of the all the samples. The highest number of species was found on fine woody debris (FWD, 2e10 cm diam) than coarse woody debris (CWD, >10 cm diam) and very fine woody debris (VFWD, <2 cm diam). Species-accumulation curves did not reach an asymptote for any of the groups or wood diameter classes studied. Polyporoids were more frequently recorded on CWD (61% of collections) and corticioids on VFWD (77%). Species richness estimated by non-parametric estimators indicates an Agaricomycotina species richness between 450 and 700 taxa. Our results show that Uruguayan riparian forests, despite its limited area and fragmentation, support a wood-inhabiting Agaricomycotina diversity comparable to less fragmented forests with more plant diversity.
650 $aHONGOS
653 $aAGARICOMYCETES
653 $aBOSQUE RIBEREÑO
653 $aBOSQUES NATIVOS
653 $aCORTICIACEAE
653 $aFUNGAL DIVERSITY
653 $aHONGOS DE LA MADERA
653 $aPOLYPORACEAE
653 $aURUGUAY
653 $aWARM TEMPERATURE FOREST
700 1 $aNAKASONE, K.K.
700 1 $aBETTUCCI, L.
773 $tMycoscience, 2019, no.60, p.156-164.
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