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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
27/07/2022 |
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Actualizado : |
27/02/2023 |
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Tipo de producción científica : |
Trabajos en Congresos/Conferencias |
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Autor : |
LOURENCO, D.; TSURUTA, S.; AGUILAR, I.; MASUDA, Y.; BERMANN, M.; LEGARRA, A.; MISZTAL, I. |
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Afiliación : |
D. LOURENCO, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; S. TSURUTA, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Y. MASUDA, Rakuno Gakuen University, 069-8501, Ebetsu, Hokkaido, Japan; M. BERMANN, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA; A. LEGARRA, Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, UMR1388 GenPhySE, 31326, Castanet Tolosan, France; I. MISZTAL, University of Georgia, Department of Animal and Dairy Science, 30602, Athens, GA, USA. |
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Título : |
Recent updates in the BLUPF90 software suite. [366]. |
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Complemento del título : |
Part 19 - Methods and tools: software and computing strategies. |
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Fecha de publicación : |
2022 |
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Fuente / Imprenta : |
In: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), 12., Rotterdam, the Netherlands, 3-8 July 2022. doi: https://doi.org/10.3920/978-90-8686-940-4_366 |
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Páginas : |
1530-1533. |
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DOI : |
10.3920/978-90-8686-940-4_366 |
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Idioma : |
Inglés |
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Notas : |
Article history: Published online: February 9, 2023. -- Corresponding author: D. Lourenco, email: danilino@uga.edu |
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Contenido : |
ABSTRACT.- BLUPF90 is a flexible software suite that estimates variance components, cross-classified and covariate effects, breeding values, accuracies, and SNP effects, among others. It is based on mixed models and focuses mainly on animal breeding and genetics applications. This collection of software is continually under development to incorporate new methods and algorithms, improve efficiency, and broaden usage. A significant change undergoing BLUPF90 is the merge of variance components and breeding values estimation software. Some of the recent developments include the implementation of p-values for SNP effects in single-step GWAS, a new algorithm to approximate reliability or accuracy of GEBV, the inclusion of metafounders or unknown parent groups in ssGBLUP to set the base populations, and several optimizations to speed up computing time with many genotyped animals. BLUPF90 is a resourceful collection of efficient software that handles millions of genotyped animals and dozens of millions of records or individuals in pedigree. |
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Palabras claves : |
BLUP program; BLUPF90 software. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16999/1/978-90-8686-940-4-366.pdf
https://www.wageningenacademic.com/doi/epdf/10.3920/978-90-8686-940-4_366
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Marc : |
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100 1 $aLOURENCO, D.
245 $aRecent updates in the BLUPF90 software suite. [366].$h[electronic resource]
260 $aIn: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), 12., Rotterdam, the Netherlands, 3-8 July 2022. doi: https://doi.org/10.3920/978-90-8686-940-4_366$c8686
300 $a1530-1533.
500 $aArticle history: Published online: February 9, 2023. -- Corresponding author: D. Lourenco, email: danilino@uga.edu
520 $aABSTRACT.- BLUPF90 is a flexible software suite that estimates variance components, cross-classified and covariate effects, breeding values, accuracies, and SNP effects, among others. It is based on mixed models and focuses mainly on animal breeding and genetics applications. This collection of software is continually under development to incorporate new methods and algorithms, improve efficiency, and broaden usage. A significant change undergoing BLUPF90 is the merge of variance components and breeding values estimation software. Some of the recent developments include the implementation of p-values for SNP effects in single-step GWAS, a new algorithm to approximate reliability or accuracy of GEBV, the inclusion of metafounders or unknown parent groups in ssGBLUP to set the base populations, and several optimizations to speed up computing time with many genotyped animals. BLUPF90 is a resourceful collection of efficient software that handles millions of genotyped animals and dozens of millions of records or individuals in pedigree.
653 $aBLUP program
653 $aBLUPF90 software
700 1 $aTSURUTA, S.
700 1 $aAGUILAR, I.
700 1 $aMASUDA, Y.
700 1 $aBERMANN, M.
700 1 $aLEGARRA, A.
700 1 $aMISZTAL, I.
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INIA Las Brujas (LB) |
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| Registros recuperados : 12 | |
| 1. |  | GARCÍA ROCHE, M.; PEREZ, E. Aceites esenciales de plantas nativas promisorios para el control de bacteriosis en tomate. In: INIA (Instituto Nacional de Investigación Agropecuaria); Programa Nacional Producción Hortícola. Resultados experimentales en sanidad de tomate y morrón. Jornada de Divulgación. Canelones (Uruguay): INIA, 2015. p. 62-65 (Serie Actividades de Difusión ; 756). La investigación que da origen a los resultados presentados en la presente publicación recibió fondos de la Agencia Nacional de Investigación e Innovación bajo el código
INI_X_2013_1_10160 y del Instituto Nacional de Investigación...| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 4. | | GARCIA-ROCHE, M.; CAÑIBE, G.; TALMÓN, D.; MENDOZA, A.; CASSINA, A.; QUIJANO, C.; CARRIQUIRY, M. Abundancia mitocondrial hepática en dos genotipos holstein en pastoreo. In: Jornadas Uruguayas de Buiatría, 48., 2021. Paysandú, Uruguay: Centro Médico Veterinario de Paysandú; Filial de la Sociedad de Medicina Veterinaria del Uruguaya; Sociedad Uruguaya de Buiatría, 31 de Mayo al 4 de Junio 2021. [Poster]. p.251-253.| Biblioteca(s): INIA La Estanzuela. |
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| 5. | | CASAL, A.; GARCÍA-ROCHE, M.; NAVAJAS, E.; CASSINA, A.; CARRIQUIRY, M Differential hepatic oxidative status in steers with divergent residual feed intake phenotype. Animal, 1 January 2020, Volume 14, Issue 1, Pages 78-85. Doi: https://doi.org/10.1017/S1751731119001332 Article history: Received 12 December 2018 // Accepted 6 May 2019 // Published online: 20 June 2019.
Supplementary materials.
Corresponding author: Casal, A.; Departamento de Produccion Animal y Pasturas, Facultad de Agronomia,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | GARCÍA-ROCHE, M.; TALMÓN, D.; CAÑIBE, G.; MENDOZA, A.; QUIJANO, C.; CASSINA, A.; CARRIQUIRY, M. Expresión génica hepática de la vía del receptor alfa activado por proliferador de peroxisomas A (PPARA) en dos genotipos Holstein. [abstract]. In: AUPA, Proceedings del VII Congreso Uruguayo de Producción Animal. Sección Cambio Climático y Producción Sostenible (Climate Change Section), 14 y 15 diciembre 2021. Archivos Latinoamericanos de Producción Animal, 29(Supl.1), p.2. (Archivos Latinoamericanos de Producción Animal, Vol.29, Supl.1)| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | GARCÍA-ROCHE, M.; TALMÓN, D.; CAÑIBE, G.; ASTESSIANO, A.L.; MENDOZA, A.; QUIJANO, C.; CASSINA, A.; CARRIQUIRY, M. Differential hepatic mitochondrial function and gluconeogenic gene expression in 2 Holstein strains in a pasture-based system. Journal of Dairy Science, July 2022, Volume 105, Issue 7, Pages 5723-5737. OPEN ACCESS. doi: https://doi.org/10.3168/jds.2021-21358 Article history: Received 30 September 2021, Accepted 17 March 2022, Available online 20 May 2022, Version of Record 22 June 2022. -- Corresponding author: García-Roche, M.; Departamento de Producción Animal y Pasturas, Facultad de...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA La Estanzuela. |
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| 10. | | GARCÍA-ROCHE, M.; TALMÓN, D.; CAÑIBE, G.; ASTESSIANO, A.L.; MENDOZA, A.; CASSINA, A.; QUIJANO, C.; CARRIQUIRY, M. Hepatic metabolism of grazing cows of two Holstein strains under two feeding strategies with different levels of pasture inclusion. PLoS ONE, October 2023, Volume 18, Issue 10, e0290551. https://doi.org/10.1371/journal.pone.0290551 -- OPEN ACCESS. Article history: Received March 22 2023; Accepted August 9 2023; Published October 26 2023. -- Correspondence: García-Roche, M.; Facultad de Agronomía, Departamento de Producción Animal y Pasturas, Universidad de la República,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 11. | | GARCIA ROCHE, M.; TALMÓN, D.; JORGE-SMEDING, E.; CASAL, A.; MENDOZA, A.; QUIJANO, C.; CARRIQUIRY, M; CASSINA, A. Función mitocondrial en biopsias de hígado de vacas lecheras de dos genotipos Holstein en condiciones pastoriles. [Resumen]. En: CONGRESO ASOCIACIÓN URUGUAYA DE PRODUCCIÓN ANIMAL (6º, Marzo, 2018, Tacuarembó, Uruguay). Tacuarembó: AUPA, 2018. p. 34.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA La Estanzuela. |
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| 12. | | GARCIA-ROCHE, M.; CAÑIBE, G.; ASTESSIANO, A.; TALMON, D.; MENDOZA, A.; CASSINA, A.; QUIJANO, C.; CARRIQUIRY, M. O14 Hepatic energy reserves and carnitine palmitoyltransferase activity in grazing dairy cows of two pasture-based systems during lactation. [conference abstract] Animal - science proceedings, August 2022, Volume 13, Issue 3, pages 260-261. https://doi.org/10.1016/j.anscip.2022.07.024 Article histrory: Available online 16 September 2022, Version of Record 16 September 2022. -- Funding: MGR was supported by CAP fellowship BDDX_2018_1#49004502. The project was funded by CSIC I+D 2018 ID 103 awarded to MC and CQ and by...| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| Registros recuperados : 12 | |
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