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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
10/05/2019 |
Actualizado : |
10/05/2019 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
GONZÁLEZ-ARCOS, M.; DE NORONHA FONSECA, M.E.; ZANDONADI, D.B.; PERES, L.E.P.; ARRUABARRENA, A.; FERREIRA, D.S.; KEVEI, Z.; MOHAREB, F.; THOMPSON, A.J.; BOITEUX, L.S. |
Afiliación : |
MATIAS GONZÁLEZ-ARCOS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARIA ESTHER DE NORONHA FONSECA, Nacional Center for Vegetable Crops Research (CNPH) – Embrapa Vegetable Crops (Hortaliças), Brazil; DANIEL BASÍLIO ZANDONADI, Universidade Federal do Rio de Janeiro (UFRJ), Nupem, Macaé, Brazil; LÁZARO E. P. PERES, Laboratory of Hormonal Control of Plant Development, Departamento de Ciências Biológicas, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo (ESALQ/USP), Piracicaba, Brazil; ANA ARRUABARRENA PASCOVICH, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; DEMETRYUS S. FERREIRA, Cranfield Soil and Agrifood Institute, Cranfield University, Cranfield, UK.; ZOLTAN KEVEI, Cranfield Soil and Agrifood Institute, Cranfield University, Cranfield, UK.; FADY MOHAREB, Cranfield Soil and Agrifood Institute, Cranfield University, Cranfield, UK.; ANDREW J. THOMPSON, Cranfield Soil and Agrifood Institute, Cranfield University, Cranfield, UK.; LEONARDO S. BOITEUX, Nacional Center for Vegetable Crops Research (CNPH) – Embrapa Vegetable Crops (Hortaliças), Brasília, Brazil. |
Título : |
A loss-of-function allele of a TAC1-like gene (SlTAC1) located on tomato chromosome 10 is a candidate for the Erectoid leaf (Erl) mutation. |
Fecha de publicación : |
2019 |
Fuente / Imprenta : |
Euphytica, 1 May 2019, Volume 215, Issue 5, Article number 95. |
ISSN : |
0014-2336 |
DOI : |
10.1007/s10681-019-2418-1 |
Idioma : |
Inglés |
Notas : |
Article history: Received: 21 December 2018 / Accepted: 10 April 2019 / First Online: 16 April 2019.
This work was done in the context of MG-A doctoral studies program at the Facultad de Agronomía, Universidad de la República Oriental del Uruguay. We thank A. Manzzioni, I. Laxague and N. Zunini of INIA Salto Grande, and W. P. Dutra and A. F. Costa of Embrapa Vegetable Crops, for their assistance in conducting some of the experiments. LSB and MENF were supported by CNPq and CAPES grants. AJT and FM were supported by BBSRC Research Grant BB/ L011611/1. |
Contenido : |
ABSTRACT.
The genetic basis of an erectoid leaf phenotype was investigated in distinct tomato breeding populations, including one derived from Solanum lycopersicum ?LT05? (with the erectoid leaf phenotype and uniform ripening, genotype uu) × S. pimpinellifollium ?TO-937? (with the wild-type leaf phenotype and green fruit shoulder, genotype UU). The erectoid leaf phenotype was inherited as a semi-dominant trait and it co-segregated with the u allele of gene SlGLK2 (Solyc10g008160). This genomic location coincides with a previously described semi-dominant mutation named as Erectoid leaf (Erl). The genomes of ?LT05?, ?TO-937?, and three other unrelated accessions (with the wild-type Erl + allele) were resequenced with the aim of identifying candidate genes. Comparative genomic analyses, including the reference genome ?Heinz 1706? (Erl + allele), identified an Erectoid leaf-specific single nucleotide polymorphism (SNP) in the gene Solyc10g009320. This SNP caused a change of a glutamine codon (present in all the wild-type genomes) to a TAA (= ochre stop-codon) in the Erl allele, resulting in a smaller version of the predicted mutant protein (221 vs. 279 amino acids). Solyc10g009320, previously annotated as an ?unknown protein?, was identified as a TILLER ANGLE CONTROL1-like gene. Linkage between the Erl and Solyc10g009320 was confirmed via Sanger sequencing of the PCR amplicons of the two variant alleles. No recombinants were detected in 265 F 2 individuals. Contrasting S 7 near-isogenic lines were also homozygous for each of the alternate alleles, reinforcing Solyc10g009320 as a strong Erl candidate gene and opening the possibility for fine-tuning manipulation of tomato architecture in breeding programs.
© 2019, Springer Nature B.V. MenosABSTRACT.
The genetic basis of an erectoid leaf phenotype was investigated in distinct tomato breeding populations, including one derived from Solanum lycopersicum ?LT05? (with the erectoid leaf phenotype and uniform ripening, genotype uu) × S. pimpinellifollium ?TO-937? (with the wild-type leaf phenotype and green fruit shoulder, genotype UU). The erectoid leaf phenotype was inherited as a semi-dominant trait and it co-segregated with the u allele of gene SlGLK2 (Solyc10g008160). This genomic location coincides with a previously described semi-dominant mutation named as Erectoid leaf (Erl). The genomes of ?LT05?, ?TO-937?, and three other unrelated accessions (with the wild-type Erl + allele) were resequenced with the aim of identifying candidate genes. Comparative genomic analyses, including the reference genome ?Heinz 1706? (Erl + allele), identified an Erectoid leaf-specific single nucleotide polymorphism (SNP) in the gene Solyc10g009320. This SNP caused a change of a glutamine codon (present in all the wild-type genomes) to a TAA (= ochre stop-codon) in the Erl allele, resulting in a smaller version of the predicted mutant protein (221 vs. 279 amino acids). Solyc10g009320, previously annotated as an ?unknown protein?, was identified as a TILLER ANGLE CONTROL1-like gene. Linkage between the Erl and Solyc10g009320 was confirmed via Sanger sequencing of the PCR amplicons of the two variant alleles. No recombinants were detected in 265 F 2 individuals. Contrasting S 7 near-... Presentar Todo |
Palabras claves : |
Breeding; Comparative genomic analysis; Plant architecture; Resequencing; Solanum lycopersicum. |
Thesagro : |
TOMATE. |
Asunto categoría : |
F01 Cultivo |
Marc : |
LEADER 03339naa a2200337 a 4500 001 1059755 005 2019-05-10 008 2019 bl uuuu u00u1 u #d 022 $a0014-2336 024 7 $a10.1007/s10681-019-2418-1$2DOI 100 1 $aGONZÁLEZ-ARCOS, M. 245 $aA loss-of-function allele of a TAC1-like gene (SlTAC1) located on tomato chromosome 10 is a candidate for the Erectoid leaf (Erl) mutation.$h[electronic resource] 260 $c2019 500 $aArticle history: Received: 21 December 2018 / Accepted: 10 April 2019 / First Online: 16 April 2019. This work was done in the context of MG-A doctoral studies program at the Facultad de Agronomía, Universidad de la República Oriental del Uruguay. We thank A. Manzzioni, I. Laxague and N. Zunini of INIA Salto Grande, and W. P. Dutra and A. F. Costa of Embrapa Vegetable Crops, for their assistance in conducting some of the experiments. LSB and MENF were supported by CNPq and CAPES grants. AJT and FM were supported by BBSRC Research Grant BB/ L011611/1. 520 $aABSTRACT. The genetic basis of an erectoid leaf phenotype was investigated in distinct tomato breeding populations, including one derived from Solanum lycopersicum ?LT05? (with the erectoid leaf phenotype and uniform ripening, genotype uu) × S. pimpinellifollium ?TO-937? (with the wild-type leaf phenotype and green fruit shoulder, genotype UU). The erectoid leaf phenotype was inherited as a semi-dominant trait and it co-segregated with the u allele of gene SlGLK2 (Solyc10g008160). This genomic location coincides with a previously described semi-dominant mutation named as Erectoid leaf (Erl). The genomes of ?LT05?, ?TO-937?, and three other unrelated accessions (with the wild-type Erl + allele) were resequenced with the aim of identifying candidate genes. Comparative genomic analyses, including the reference genome ?Heinz 1706? (Erl + allele), identified an Erectoid leaf-specific single nucleotide polymorphism (SNP) in the gene Solyc10g009320. This SNP caused a change of a glutamine codon (present in all the wild-type genomes) to a TAA (= ochre stop-codon) in the Erl allele, resulting in a smaller version of the predicted mutant protein (221 vs. 279 amino acids). Solyc10g009320, previously annotated as an ?unknown protein?, was identified as a TILLER ANGLE CONTROL1-like gene. Linkage between the Erl and Solyc10g009320 was confirmed via Sanger sequencing of the PCR amplicons of the two variant alleles. No recombinants were detected in 265 F 2 individuals. Contrasting S 7 near-isogenic lines were also homozygous for each of the alternate alleles, reinforcing Solyc10g009320 as a strong Erl candidate gene and opening the possibility for fine-tuning manipulation of tomato architecture in breeding programs. © 2019, Springer Nature B.V. 650 $aTOMATE 653 $aBreeding 653 $aComparative genomic analysis 653 $aPlant architecture 653 $aResequencing 653 $aSolanum lycopersicum 700 1 $aDE NORONHA FONSECA, M.E. 700 1 $aZANDONADI, D.B. 700 1 $aPERES, L.E.P. 700 1 $aARRUABARRENA, A. 700 1 $aFERREIRA, D.S. 700 1 $aKEVEI, Z. 700 1 $aMOHAREB, F. 700 1 $aTHOMPSON, A.J. 700 1 $aBOITEUX, L.S. 773 $tEuphytica, 1 May 2019, Volume 215, Issue 5, Article number 95.
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2. | | PÉREZ DE VIDA, F.; FISCHER, A.J. Rice (Oryza sativa L.) plant traits dissection for early vigor and competitiveness with late watergrass Echinochloa phyllopogon (Stapf) Koss. 1. Characterization of watergrass and rice seedling vigor. [Poster]. In: Proceedings of the Temperate Rice Conference, 4, 2007, Novara, Italy. Ed. Bocchi, A., Ferrero, A., Porro, A., 2007, Novara: SIRFI. p. 240-241.Biblioteca(s): INIA Treinta y Tres. |
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3. | | PÉREZ DE VIDA, F.; FISCHER, A.J. Quantitative trait loci and path analysis of vegetative traits in rice (Oryza sativa L.). In: Proceedings of the Temperate Rice Conference, 4, 2007, Novara, Italy. Ed. Bocchi, A., Ferrero, A., Porro, A., 2007, Novara: SIRFI. p. 58-59.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Treinta y Tres. |
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5. | | PÉREZ DE VIDA, F.; FERNÁNDEZ, G.M.; FISCHER, A.J.; MACKILL, D.; LACA, E. Ability of rice cultivars to suppress Echinochloa phyllopogon (Stapf) Koss. [Resumen]. ln: Conferencia Internacional de Arroz de Clima Templado, 3., 2003, Punta del Este, Uruguay Resúmenes. Montevideo (Uruguay): ACA; INIA; GMA; FLAR, 2003. p. 69 "Instituto Nacional de Investigación Agropecuaria, Uruguay (INIA); Asociación de Cultivadores de Arroz (ACA); Gremial de Molinos Arroceros (GMA); Fondo Latinoamericano de Arroz de Riego (FLAR)"Tipo: Abstracts/Resúmenes |
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6. | | WILLIAMS, J.F.; HAIR, M.; FISCHER, A.J.; CHEETHAM, D.; ROEL, A.; PLANT, R. Measuring yield impact of bearded sprangletop (Leptochloa fascicularis) in California rice: abstract. ln: Rice Technical Working Group, 28., 2000 Proceedings. Biloxi, Mississippi (USA): Rice Technical Working Group, 2000. p. 158-159Tipo: Abstracts/Resúmenes |
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8. | | PÉREZ DE VIDA, F.; FISCHER, A.J.; MACKILL, D.; LACA, E. Rice plant traints related to yielding ability under watergrass (Echinochloa phylopogon) competition in California's temperate conditions. II. Traits and yield trade-off. [Resumen]. ln: Conferencia Internacional de Arroz de Clima Templado, 3., 2003, Punta del Este, Uruguay Resúmenes. Montevideo (Uruguay): ACA; INIA; GMA; FLAR, 2003. p. 37 "Instituto Nacional de Investigación Agropecuaria, Uruguay (INIA); Asociación de Cultivadores de Arroz (ACA); Gremial de Molinos Arroceros (GMA); Fondo Latinoamericano de Arroz de Riego (FLAR)"Tipo: Abstracts/Resúmenes |
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9. | | PÉREZ DE VIDA, F.; LACA, E.A.; MACKILL, D.J.; FERNÁNDEZ, G.; FISCHER, A.J. Relating rice traits to weed competitiveness an yield: a path analysis. Weed Science, 2006, v.54, p. 1122-1131 Article history: Received March 6, 2006 // approved August 10, 2006. Published Dec. 2006.
DOI: https://doi.org/10.1614/WS-06-042R.1Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 2 |
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10. | | ALARCÓN-REVERTE, R.; GARCIA, M.A.; WATSON, S.B.; ABDALLAH, I.; SABATÉ, S.; HERNÁNDEZ, M.J.; DAYAN ,F.E.; FISCHER, A.J. Concerted action of target-site mutations and high EPSPS activity in glyphosate-resistant junglerice (Echinochloa colona) from California. Pest Management Science, v. 71, n. 7, p. 996-2007, 2015. Article history: Received: 4 April 2014 Revised: 31 July 2014/Accepted article published: 13 August 2014 /Published online in Wiley Online Library: 5 September 2014Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 1 |
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