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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
29/01/2020 |
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Actualizado : |
29/01/2020 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
CARVALHO, F.E.; ESPIGOLAN, R.; BERTON, M.P.; NETO, J.B.S.; SILVA, R.P.; GRIGOLETTO, L.; SILVA, R.M.O.; FERRAZ, J.B.S.; ELER, J.P.; AGUILAR, I.; LÔBO, R.B.; BALDI, F. |
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Afiliación : |
F.E.CARVALHO, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; R. ESPIGOLAN, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; M. P. BERTON, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil; J. B. S. NETO, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil; R. P. SILVA, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; L. GRIGOLETTO, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; R. M. O. SILVA, Zoetis, 1240 Dr. Chucri Zaidan Street, Edifício Morumbi Corporate, Diamond Tower, 4th floor, São Paulo, SP, Brazil; J. B. S. FERRAZ, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; J. P . ELER, Departament of Veterinary Medicine, College of Animal Science and Food Engineer, University of São Paulo (USP), Pirassununga/SP, Brazil; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LÔBO, R.B., Nacional Association of Breeders and Researchers (ANCP), Ribeirão Preto, SP, Brazil; F. BALDI, Departament of Animal Science, College of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal/SP, Brazil. |
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Título : |
Genome-wide association study and predictive ability for growth traits in Nellore cattle. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Livestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861 |
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ISSN : |
1871-1413 |
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DOI : |
10.1016/j.livsci.2019.103861 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019.
Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher Education Personnel (CAPES) in conjunction with the Postgraduate Program on Zootecnia, Universidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos (FZEA, USP). To National Association of Breeders and Researchers (ANCP, Ribeirão Preto-SP, Brazil). To Fapesp, ( Sao Paulo Research Foundation , grants #2016/222751-6 #2017/10493-5 ). F.B held productivity research fellowships from The Brazilian National Council for Scientific and Technological Development (CNPQ). |
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Contenido : |
ABSTRACT.
This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve the identification of causative genetic variants in growth traits in indicine cattle.
© 2019 Elsevier B.V. MenosABSTRACT.
This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve ... Presentar Todo |
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Palabras claves : |
BEEF CATTLE; Genomic; Predictive ability; Single nucleotide polymosphism. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
https://www.sciencedirect.com/science/article/pii/S1871141319308935/pdfft?md5=2a644d20a870893fa10662e7fb7ecf40&pid=1-s2.0-S1871141319308935-main.pdf
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Marc : |
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001 1060718
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008 2020 bl uuuu u00u1 u #d
022 $a1871-1413
024 7 $a10.1016/j.livsci.2019.103861$2DOI
100 1 $aCARVALHO, F.E.
245 $aGenome-wide association study and predictive ability for growth traits in Nellore cattle.$h[electronic resource]
260 $c2020
500 $aArticle history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019. Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher Education Personnel (CAPES) in conjunction with the Postgraduate Program on Zootecnia, Universidade de São Paulo, Faculdade de Zootecnia e Engenharia de Alimentos (FZEA, USP). To National Association of Breeders and Researchers (ANCP, Ribeirão Preto-SP, Brazil). To Fapesp, ( Sao Paulo Research Foundation , grants #2016/222751-6 #2017/10493-5 ). F.B held productivity research fellowships from The Brazilian National Council for Scientific and Technological Development (CNPQ).
520 $aABSTRACT. This study aimed to identify genomic regions influencing growth traits in Nellore cattle and evaluate the predictive ability of each trait based on results obtained from single-step genome-wide association analyzes (ssGWAS) considering different single nucleotide polymorphims (SNP) densities of markers. The National Association of Breeders and Researchers provided the dataset, from eighteen Nellore herds participating of the Nellore Brazilian breeding program. The traits birth weight (BW), adjusted weight at 210 (W210) and at 450 (W450) days of age and adult cow weight (ACW) were considered. A total of 963 animals, genotyped using the Illumina BovineHD BeadChip, were used as a reference population to impute genotypes of 7,689 animals, genotyped in low-density panel. Genotype imputation was performed using the FImpute 2.2 software. The ssGWAS was used to identify genomic regions associated to growth traits. Several genes in enrichment analysis were related to muscle and adipose tissue development and metabolism, feed efficiency, milk composition and maternal behavior. The predictive ability varied from low (0.10) to moderate (0.68). The predictive ability and bias for both panels were similar for all traits. The results found in this study should improve the understanding of genetic and physiologic mechanism associated with growth traits. However, the association of these results with other approaches, like system biologic and other omics information should improve the identification of causative genetic variants in growth traits in indicine cattle. © 2019 Elsevier B.V.
653 $aBEEF CATTLE
653 $aGenomic
653 $aPredictive ability
653 $aSingle nucleotide polymosphism
700 1 $aESPIGOLAN, R.
700 1 $aBERTON, M.P.
700 1 $aNETO, J.B.S.
700 1 $aSILVA, R.P.
700 1 $aGRIGOLETTO, L.
700 1 $aSILVA, R.M.O.
700 1 $aFERRAZ, J.B.S.
700 1 $aELER, J.P.
700 1 $aAGUILAR, I.
700 1 $aLÔBO, R.B.
700 1 $aBALDI, F.
773 $tLivestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861
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Registro original : |
INIA Las Brujas (LB) |
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| Registros recuperados : 13 | |
| 1. |  | ESPIGOLAN, R.; BALDI, F.; BANCHERO, G.; BRITO, G.; LA MANNA, A.; ALBUQUERQUE, L.G. Aplicação de modelos não-lineares para o ajuste de características. REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 47., 2010, Salvador, BA. Empreendedorismo e Progresso Científicos na Zootecnia
Brasileira de Vanguarda Brasília, DF: Sociedade Brasileira de Zootecnia: UEM, 2010. Anais| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA La Estanzuela. |
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| 2. | | ESPIGOLAN, R.; BALDI, F.; BANCHERO, G.; BRITO, G.; LA MANNA, A.; ALBUQUERQUE, L.G. Efeito da estratégia de crescimento sobre as características de carcaça e da carne em novilhos da raça Hereford. REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 47., 2010, Salvador, BA. Empreendedorismo e Progresso Científicos na Zootecnia
Brasileira de Vanguarda Brasília, DF: Sociedade Brasileira de Zootecnia: UEM, 2010. Anais| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA La Estanzuela. |
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| 3. | | RODRÍGUEZ, J.D.; PERIPOLLI, E.; LONDOÑO-GIL, M.; ESPIGOLAN, R.; LÔBO, R. B.; LÓPEZ-CORREA, R.; AGUILAR, I.; BALDI, F. Effect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population. Research paper. Animal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581 Article history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez,
Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 4. | | ESPIGOLAN, R.; BALDI, F.; BOLIGON, A.A.; BANCHERO, G.; BRITO, G.; LA MANNA, A.; MONTOSSI, F.; FERNANDEZ, E.; ALBUQUERQUE, L.G. DE Aplicação de modelos não-lineares para descrever a evolução de características de crescimento e carcaça em bovinos da raça Hereford. [Application of nonlinear models to describe the evolution of growth and carcass traits in hereford cattle.] Ciência Rural, Santa Maria, v. 43, n. 3, p. 513-519, 2013. Article history: Recebido para publicação 16 agosto 2012 / Aprovado em 25 setembro 2012 / Devolvido pelo autor 21 novembro 2012 / CR-2012-0685.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - 2 |
| Biblioteca(s): INIA La Estanzuela; INIA Tacuarembó. |
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| 5. | | LONDOÑO-GIL, M.; CARDONA-CIFUENTES, D.; ESPIGOLAN, R.; PERIPOLLI, E.; LÔBO, R. B.; PEREIRA, A. S. C.; AGUILAR, I.; BALDI, F. Genomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle. Tropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4 Article history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 6. | | RODRÍGUEZ NEIRA, J.D.; PERIPOLLI, E.; DE NEGREIROS M.P.M.; ESPIGOLAN, R.; LÓPEZ-CORREA R.; AGUILAR, I.; LOBO R.B.; BALDI, F. Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP. Journal of Applied Genetics, 2022, Volume 63, Issue 2, pages 389-400. doi: https://doi.org/10.1007/s13353-022-00685-0 Article history: Received 26 September 2021; Revised 25 January 2022; Accepted 2 February 2022.
Corresponding author: Rodriguez Neira, J.D.; Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | TONUSSI, R.L.; LONDOÑO-GIL, M.; DE OLIVEIRA SILVA, R.M.; MAGALHÃES, A.F.B.; AMORIM, S:T.; KLUSKA, S.; ESPIGOLAN, R.; PERIPOLLI, E.; PEREIRA, A.S.C.; LÔBO, R.B.; AGUILAR, I.; LOURENÇO, D.A.L.; BALDI, F. Accuracy of genomic breeding values and predictive ability for postweaning liveweight and age at first calving in a Nellore cattle population with missing sire information. Tropical Animal Health and Production, 2021, Volume 53, Issue 4, Article number 432. doi: https://doi.org/10.1007/s11250-021-02879-w Article history: Received 19 March 2021; Accepted 30 July 2021; Published online 10 August 2021.
Corresponding author: Londoño-Gil, M.; Grupo de Melhoramento Animal, Faculdade de Ciências Agrárias E Veterinárias, Universidade Estadual...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 8. | | SILVA, R.P.; ESPIGOLAN, R.; BERTON, M.P.; STAFUZZA, N.B.; SANTOS, F.S.; NEGREIROS, M.P.; SCHUCHMANN, R.K.; RODRIGUEZ, J.D.; LÔBO, R.B.; BANCHERO, G.; PEREIRA, A.S.C.; BERGMANN, J.A.G.; BALDI, F. Genetic parameters and genomic regions associated with calving ease in primiparous Nellore heifers. Livestock Science, October 2020, Volume 240, Article number 104183. Doi: https://doi.org/10.1016/j.livsci.2020.104183 Article history: Received 19 February 2020 /Received in revised form 25 June 2020 /Accepted 1 August 2020/Available online 02 August 2020. /Corresponding author: E-mail address: fernandobaldiuy@gmail.com (F. Baldi). This work was...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA La Estanzuela. |
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| 9. | | CARVALHO, F.E.; ESPIGOLAN, R.; BERTON, M.P.; NETO, J.B.S.; SILVA, R.P.; GRIGOLETTO, L.; SILVA, R.M.O.; FERRAZ, J.B.S.; ELER, J.P.; AGUILAR, I.; LÔBO, R.B.; BALDI, F. Genome-wide association study and predictive ability for growth traits in Nellore cattle. Livestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861 Article history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019.
Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 10. | | TONUSSI, R. L.; SILVA, R. M. D. O.; MAGALHÃES, A.F.B.; ESPIGOLAN, R.; PERIPOLLI, E.; OLIVIERI, B. F.; FEITOSA, F. L. B.; LEMOS, M. V. A.; BERTON, M. P.; CHIAIA, H. L. J.; PEREIRA, A. S. C.; LÔBO, R. B.; BEZERRA, L. A. F.; MAGNABOSCO, C. D. U.; LOURENÇO, D.A.L.; AGUILAR, I.; BALDI, F. Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data. (Research article). PLoS ONE, September 2017, Volume 12, Issue 9, Article number e0181752. OPEN ACCESS. Article history: Received September 22, 2016 // Accepted July 6, 2017 // Published September 28, 2017.
Data Availability Statement: All relevant data are within the paper, its Supporting Information files, and in Figshare.
Funding: This...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 11. | | LEMOS, M.V.A.; CHIAIA, H.L.J.; BERTON, M.P.; FEITOSA, F.L.B.; ABOUJAOUD, C.; CAMARGO, G.M.F.; PEREIRA, A.S.C.; ALBUQUERQUE, L.G.; FERRINHO, A.M.; MUELLER, L.F.; MAZALLI, M.R.; FURLAN, J.J.M.; CARVALHEIRO, R.; GORDO, D.M.; TONUSSI, R.; ESPIGOLAN, R.; SILVA, R.M.O.; DE OLIVEIRA, H.N.; DUCKETT, S.; AGUILAR, I.; BALDI, F. Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure. BMC Genomics, 2016, v. 17:213. Received: 19 November 2015 / Accepted: 23 February 2016 /Published: 9 March 2016| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 12. | | CHIAIA, H.L.J.; PERIPOLLI, E.; DE OLIVEIRA SILVA, R.M.; FEITOSA, F.L.B.; DE LEMOS, M.V.A.; BERTON, M.P.; OLIVIERI, B.F.; ESPIGOLAN, R.; TONUSSI, R.L.; GORDO, D.G.M.; DE ALBUQUERQUE, L.G.; DE OLIVEIRA, H.N.; FERRINHO, A.M.; MUELLER, L.F.; KLUSKA, S.; TONHATI, H.; PEREIRA, A.S.C.; AGUILAR, I.; BALDI, F. Genomic prediction ability for beef fatty acid profile in Nelore cattle using different pseudo-phenotypes. Journal of Applied Genetics, 1 November 2018, volume 59, Issue 4, pages 493-501. Article history: Received: 15 May 2018 // Revised: 28 August 2018 // Accepted: 17 September 2018.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 13. | | FEITOSA, F. L. B.; OLIVIERI, B. F.; ABOUJAOUDE, C.; PEREIRA, A. S. C.; DE LEMOS, M. V. A.; CHIAIA, H. L. J.; BERTON, M. P.; PERIPOLLI, E.; FERRINHO, A. M.; MUELLER, L. F.; MAZZALI, M. R.; DE ALBUQUERQUE, L. G.; DE OLIVERA, H. N.; TONHATI, H.; ESPIGOLAN, R.; TONUSSI, R. L.; DE OLIVIERA SILVA, R. M.; GORDO, D. G. M.; MAGALHAES, A. F. B.; AGUILAR, I.; BALDI, F. S. B. Genetic correlation estimates between beef fatty acid profile with meat and carcass traits in Nellore cattle finished in feedlot. Journal of Applied Genetics, 2017, 58 (1), 123-132. Article history: Received: 15 December 2015 /Revised: 10 March 2016 /Accepted: 5 July 2016 / Published Online: 30 July 2016| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| Registros recuperados : 13 | |
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