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![](/consulta/web/img/deny.png) | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
15/03/2023 |
Actualizado : |
15/03/2023 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
LONDOÑO-GIL, M.; CARDONA-CIFUENTES, D.; ESPIGOLAN, R.; PERIPOLLI, E.; LÔBO, R. B.; PEREIRA, A. S. C.; AGUILAR, I.; BALDI, F. |
Afiliación : |
MARISOL LONDOÑO-GIL, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; DANIEL CARDONA-CIFUENTES, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAFAEL ESPIGOLAN, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil; ELISA PERIPOLLI, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAYSILDO B. LÔBO, Associação Nacional de Criadores e Pesquisadores (ANCP), Rua João Godoy, 463, Jardim América, CEP, SP, Ribeirão Preto, 14020-230, Brazil; ANGÉLICA S. C. PEREIRA, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, Av. Duque de Caxias Norte, 225 Campus Fernando Costa Jardim Elite, CEP, SP, Pirassununga, 13635-900, Brazil; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BALDI, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil. |
Título : |
Genomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle. |
Fecha de publicación : |
2023 |
Fuente / Imprenta : |
Tropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4 |
ISSN : |
0049-4747 |
DOI : |
10.1007/s11250-023-03508-4 |
Idioma : |
Inglés |
Notas : |
Article history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. -- |
Contenido : |
The aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V. |
Palabras claves : |
Beef cattle; Genomic prediction; Genomic selection; Pedigree uncertainty. |
Asunto categoría : |
L10 Genética y mejoramiento animal |
Marc : |
LEADER 02904naa a2200289 a 4500 001 1063978 005 2023-03-15 008 2023 bl uuuu u00u1 u #d 022 $a0049-4747 024 7 $a10.1007/s11250-023-03508-4$2DOI 100 1 $aLONDOÑO-GIL, M. 245 $aGenomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle.$h[electronic resource] 260 $c2023 500 $aArticle history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. -- 520 $aThe aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V. 653 $aBeef cattle 653 $aGenomic prediction 653 $aGenomic selection 653 $aPedigree uncertainty 700 1 $aCARDONA-CIFUENTES, D. 700 1 $aESPIGOLAN, R. 700 1 $aPERIPOLLI, E. 700 1 $aLÔBO, R. B. 700 1 $aPEREIRA, A. S. C. 700 1 $aAGUILAR, I. 700 1 $aBALDI, F. 773 $tTropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4
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201. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | ROMAN, L.; LA MANNA, A.; ACOSTA, Y.; MENDOZA, A.; AGUILAR, I.; MORALES-PIÑEYRUA, J.; PLA, M.; LAURA ASTIGARRAGA, L.; SARAVIA, C. Evaluación de medidas de mitigación del estrés por calor sobre las respuestas productivas de vacas lecheras de alta producción. In: Día de Campo: producción de forraje y leche en verano. La Estanzuela, Colonia, (Uruguay): INIA, 2013. p. 15. (Serie Actividades de Difusión; 705).Biblioteca(s): INIA La Estanzuela. |
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202. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | LOURENCO, D.A.L.; FRAGOMENI, B.O.; BRADFORD, H.L.; MENEZES I.R.; FERRAZ, J.B.S.; AGUILAR, I.; MISZTAL, I. Implications of SNP weighting on single-step genomic predictions for different reference population sizes. Journal of Animal Breeding and Genetics, 2017, v. 134 (6), p. 463-471. Article history: Received: 28 February 2017 / Accepted: 19 July 2017.
This study was partially funded by the American Angus Association (St. Joseph, MO), Zoetis (Kalamazoo, MI) and by Agriculture and Food Research Initiative Competitive...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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203. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | PRAVIA, M.; NAVAJAS, E.; LEMA, O.; AGUILAR, I.; RAVAGNOLO, O.; BRITO, G.; CLARIGET, J.; PERAZA, P.; DE LOS SANTOS, J.; DALLA RIZZA, M.; MONTOSSI, F. Mejoramiento genético en eficiencia de conversión de alimento y características de canal: oportunidades a través del uso de la genómica. In: Congreso Asociación Uruguaya de Producción Animal (AUPA) (5º, 3-4 Dic. 2014, Montevideo, UY). Sede del evento: Facultad de Agronomía, Av. Garzón 780, Montevideo, Uruguay.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Tacuarembó. |
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204. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | RODRÍGUEZ NEIRA, J.D.; PERIPOLLI, E.; DE NEGREIROS M.P.M.; ESPIGOLAN, R.; LÓPEZ-CORREA R.; AGUILAR, I.; LOBO R.B.; BALDI, F. Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP. Journal of Applied Genetics, 2022, Volume 63, Issue 2, pages 389-400. doi: https://doi.org/10.1007/s13353-022-00685-0 Article history: Received 26 September 2021; Revised 25 January 2022; Accepted 2 February 2022.
Corresponding author: Rodriguez Neira, J.D.; Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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205. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | NAVAJAS, E.; PRAVIA, M.I.; LEMA, O.M.; RAVAGNOLO, O.; AGUILAR, I.; BRITO, G.; CLARIGET, J.; DALLA RIZZA, M.; MONTOSSI, F. Selección genómica en eficiencia de conversión y calidad de canal de la raza Hereford en Uruguay. Anuario Hereford (Montevideo), p. 160-172, 2014.Biblioteca(s): INIA La Estanzuela. |
| ![Ver detalles del registro](/consulta/web/img/visualizar.png) ![Imprime registro en el formato completo](/consulta/web/img/print.png) |
206. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | TORO OSPINA, A.M.; AGUILAR, I.; VARGAS DE OLIVEIRA, M.H.; CRUZ DOS SANTOS CORREIA, L. E.; VERCESI FILHO, A. E.; ALBUQUERQUE, L.G.; JOSINEUDSON AUGUSTO II DE VASCONCELOS SILVA Assessing the accuracy of imputation in the Gyr breed using different SNP panels. Genome, 2021 Oct, Volume 64 , Issue 10, pag 893-899. Open Acces. Doi: https://doi.org/10.1139/gen-2020-0081 Article history: Received 22 May 2020./ Accepted 17 April 2021. Corresponding author: Alejandra Maria Toro Ospina (email: toroospina92@gmail.com)Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA La Estanzuela. |
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207. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | TONUSSI, R.L.; LONDOÑO-GIL, M.; DE OLIVEIRA SILVA, R.M.; MAGALHÃES, A.F.B.; AMORIM, S:T.; KLUSKA, S.; ESPIGOLAN, R.; PERIPOLLI, E.; PEREIRA, A.S.C.; LÔBO, R.B.; AGUILAR, I.; LOURENÇO, D.A.L.; BALDI, F. Accuracy of genomic breeding values and predictive ability for postweaning liveweight and age at first calving in a Nellore cattle population with missing sire information. Tropical Animal Health and Production, 2021, Volume 53, Issue 4, Article number 432. doi: https://doi.org/10.1007/s11250-021-02879-w Article history: Received 19 March 2021; Accepted 30 July 2021; Published online 10 August 2021.
Corresponding author: Londoño-Gil, M.; Grupo de Melhoramento Animal, Faculdade de Ciências Agrárias E Veterinárias, Universidade Estadual...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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208. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | CARDOSO, F. F.; YOKOO, M. J. I.; GULIAS-GOMES, C. C.; OLIVEIRA, M. M. DE; TEIXEIRA, B. B. M.; ROSO, V. M.; BRITO, F. V.; CAETANO, A. R.; AGUILAR, I. Avaliação genômica de touros Hereford e Braford. Bagé: Embrapa Pecuária Sul, 2012. 32 p. (Embrapa Pecuária Sul. Documentos, 127).Biblioteca(s): INIA Las Brujas. |
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209. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | CARDOSO, F. F.; GOMES, C.C.G.; SOLLERO, B. P.; OLIVEIRA, M. M.; ROSO, V. M.; PICCOLI, M. L.; HIGA, R. H.; YOKOO, M. J.; CAETANO, A. R.; AGUILAR, I. Genomic prediction for tick resistance in Braford and Hereford cattle. Journal of Animal Science, 2015. v. 95, p. 2693-2705. Published June 25, 2015 Article history: Received December 19, 2014 / Accepted April 6, 2015.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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210. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | MISZTAL, I.; WANG, H.; AGUILAR, I.; LEGARRA, A.; TSURUTA, S.; LOURENCO, D.; FRAGOMENI, B. O.; ZHANG, X.; MUIR, W. M.; CHENG, H. H.; OKIMOTO, R.; WING, T.; HAWKEN, R. R.; ZUMBACH, B.; FERNANDO, R. GWAS using ssGBLUP. Volume Species Breeding: Poultry, 325. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, 10., Vancouver, BC, Canada, August 17-22, 2014. p.325.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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211. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | CARVALHO, F.E.; ESPIGOLAN, R.; BERTON, M.P.; NETO, J.B.S.; SILVA, R.P.; GRIGOLETTO, L.; SILVA, R.M.O.; FERRAZ, J.B.S.; ELER, J.P.; AGUILAR, I.; LÔBO, R.B.; BALDI, F. Genome-wide association study and predictive ability for growth traits in Nellore cattle. Livestock Science, January 2020, Volume 231, Article number 103861. OPEN ACCESS. Doi: https://doi.org/10.1016/j.livsci.2019.103861 Article history: Received 25 June 2019 / Revised 29 October 2019 / Accepted 4 November 2019 / Available online 6 November 2019.
Funding information: F.E. CARVALHO received a scholarship from Coordinating for the Improvement of Higher...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
| ![Ver detalles del registro](/consulta/web/img/visualizar.png) ![Acceso al objeto digital](/consulta/web/img/pdf.png) ![Imprime registro en el formato completo](/consulta/web/img/print.png) |
212. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | TONUSSI, R.L.; SILVA, R.M.O.; MAGALHÃES, A.F.B.; PERIPOLLI , E.; OLIVIERI, B.F.; FEITOSA, F.L.B.; PEREIR, A.S.C.; LÔBO, R.B.; MAGNABOSCO, C.U.; AGUILAR, I.; BALDI, F. Impact of multiple sire mating system on the accuracy of genomic breeding value prediction in a beef cattle population under selection . [abstract 206]. Issue Section: Breeding and Genetics. Journal of Animal Science. 2017, Volume 95, Issue Supplement 4, Page 102. https://doi.org/10.2527/asasann.2017.206 Article history: Published 01 August 2017. --Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Las Brujas. |
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213. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | NAVAJAS, E.; PRAVIA, M.I.; AGUIRRE, L.; MACEDO, F.; DE LA FUENTE, J.; MENDIOLA, B.; DEL PINO, M.L.; RAVAGNOLO, O.; LEMA, O.M.; PERAZA, P.; AGUILAR, I.; CARRAU, J.; CIAPPESONI, G. Tercer año de la evaluación de eficiencia de conversión de kiyú. Anuario Hereford (Montevideo), p. 182-186, 2016.Biblioteca(s): INIA La Estanzuela; INIA Treinta y Tres. |
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214. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | TONUSSI, R. L.; SILVA, R. M. D. O.; MAGALHÃES, A.F.B.; ESPIGOLAN, R.; PERIPOLLI, E.; OLIVIERI, B. F.; FEITOSA, F. L. B.; LEMOS, M. V. A.; BERTON, M. P.; CHIAIA, H. L. J.; PEREIRA, A. S. C.; LÔBO, R. B.; BEZERRA, L. A. F.; MAGNABOSCO, C. D. U.; LOURENÇO, D.A.L.; AGUILAR, I.; BALDI, F. Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data. (Research article). PLoS ONE, September 2017, Volume 12, Issue 9, Article number e0181752. OPEN ACCESS. Article history: Received September 22, 2016 // Accepted July 6, 2017 // Published September 28, 2017.
Data Availability Statement: All relevant data are within the paper, its Supporting Information files, and in Figshare.
Funding: This...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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215. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | LEMOS, M.V.A.; CHIAIA, H.L.J.; BERTON, M.P.; FEITOSA, F.L.B.; ABOUJAOUD, C.; CAMARGO, G.M.F.; PEREIRA, A.S.C.; ALBUQUERQUE, L.G.; FERRINHO, A.M.; MUELLER, L.F.; MAZALLI, M.R.; FURLAN, J.J.M.; CARVALHEIRO, R.; GORDO, D.M.; TONUSSI, R.; ESPIGOLAN, R.; SILVA, R.M.O.; DE OLIVEIRA, H.N.; DUCKETT, S.; AGUILAR, I.; BALDI, F. Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure. BMC Genomics, 2016, v. 17:213. Received: 19 November 2015 / Accepted: 23 February 2016 /Published: 9 March 2016Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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216. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | CHIAIA, H.L.J.; PERIPOLLI, E.; DE OLIVEIRA SILVA, R.M.; FEITOSA, F.L.B.; DE LEMOS, M.V.A.; BERTON, M.P.; OLIVIERI, B.F.; ESPIGOLAN, R.; TONUSSI, R.L.; GORDO, D.G.M.; DE ALBUQUERQUE, L.G.; DE OLIVEIRA, H.N.; FERRINHO, A.M.; MUELLER, L.F.; KLUSKA, S.; TONHATI, H.; PEREIRA, A.S.C.; AGUILAR, I.; BALDI, F. Genomic prediction ability for beef fatty acid profile in Nelore cattle using different pseudo-phenotypes. Journal of Applied Genetics, 1 November 2018, volume 59, Issue 4, pages 493-501. Article history: Received: 15 May 2018 // Revised: 28 August 2018 // Accepted: 17 September 2018.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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217. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | NAVAJAS, E.; VELAZCO, J.I.; SOTELO, J.; NOYA, H.; CASAL, A.; GIANOLA, D.; PERAZA, P.; BIELLI, A.; ITHURRALDE, J.; GENOVESE, P.; PÉREZ, R.; CANTALAPIEDRA, G.; AGUILAR, I.; LEMA, O.M.; RAVAGNOLO, O.; DEVINCENZI, T.; CARRACELAS, B.; DE SOUZA, G.; CIAPPESONI, G.; BRITO, G.; LUZARDO, S. Plataforma de Fenotipado intensivo - Kiyú. Anuario Hereford (Montevideo), 2020, p. 210-213.Biblioteca(s): INIA La Estanzuela; INIA Tacuarembó. |
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218. | ![Imagen marcada / sin marcar](/consulta/web/img/desmarcado.png) | FEITOSA, F. L. B.; OLIVIERI, B. F.; ABOUJAOUDE, C.; PEREIRA, A. S. C.; DE LEMOS, M. V. A.; CHIAIA, H. L. J.; BERTON, M. P.; PERIPOLLI, E.; FERRINHO, A. M.; MUELLER, L. F.; MAZZALI, M. R.; DE ALBUQUERQUE, L. G.; DE OLIVERA, H. N.; TONHATI, H.; ESPIGOLAN, R.; TONUSSI, R. L.; DE OLIVIERA SILVA, R. M.; GORDO, D. G. M.; MAGALHAES, A. F. B.; AGUILAR, I.; BALDI, F. S. B. Genetic correlation estimates between beef fatty acid profile with meat and carcass traits in Nellore cattle finished in feedlot. Journal of Applied Genetics, 2017, 58 (1), 123-132. Article history: Received: 15 December 2015 /Revised: 10 March 2016 /Accepted: 5 July 2016 / Published Online: 30 July 2016Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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Registros recuperados : 218 | |
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