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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
21/02/2014 |
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Actualizado : |
18/06/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
MISZTAL, I.; LEGARRA, A.; AGUILAR, I. |
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Afiliación : |
I. MISZTAL, Department of Animal and Dairy Science, University of Georgia, United States; A. LEGARRA, Institut National de la Recherche Agronomique (INRA), France; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information. |
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Fecha de publicación : |
2011 |
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Fuente / Imprenta : |
Journal of Dairy Science, 2011, 92 (9): 4648-4655. OPEN ACCESS. |
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ISSN : |
0022-0302 |
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DOI : |
10.3168/jds.2009-2064 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received January 26, 2009. // Accepted April 29, 2009. |
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Contenido : |
ABSTRACT.
Currently, genomic evaluations use multiple-step procedures, which are prone to biases and errors. A single-step procedure may be applicable when genomic predictions can be obtained by modifying the numerator relationship matrix A to H = A + AΔ, where AΔ includes deviations from expected relationships. However, the traditional mixed model equations require H-1, which is usually difficult to obtain for large pedigrees. The computations with H are feasible when the mixed model equations are expressed in an alternate form that also applies for singular H and when those equations are solved by the conjugate gradient techniques. Then the only computations involving H are in the form of Aq or AΔq, where q is a vector. The alternative equations have a nonsymmetric left-hand side. Computing AΔq is inexpensive when the number of nonzeros in AΔ is small, and the product Aq can be calculated efficiently in linear time using an indirect algorithm. Generalizations to more complicated models are proposed. The data included 10.2 million final scores on 6.2 million Holsteins and were analyzed by a repeatability model. Comparisons involved the regular and the alternative equations. The model for the second case included simulated AΔ. Solutions were obtained by the preconditioned conjugate gradient algorithm, which works only with symmetric matrices, and by the bi-conjugate gradient stabilized algorithm, which also works with nonsymmetric matrices. The convergence rate associated with the nonsymmetric solvers was slightly better than that with the symmetric solver for the original equations, although the time per round was twice as much for the nonsymmetric solvers. The convergence rate associated with the alternative equations ranged from 2 times lower without AΔ to 3 times lower for the largest simulated AΔ. When the information attributable to genomics can be expressed as modifications to the numerator relationship matrix, the proposed methodology may allow the upgrading of an existing evaluation to incorporate the genomic information.
© American Dairy Science Association, 2009. MenosABSTRACT.
Currently, genomic evaluations use multiple-step procedures, which are prone to biases and errors. A single-step procedure may be applicable when genomic predictions can be obtained by modifying the numerator relationship matrix A to H = A + AΔ, where AΔ includes deviations from expected relationships. However, the traditional mixed model equations require H-1, which is usually difficult to obtain for large pedigrees. The computations with H are feasible when the mixed model equations are expressed in an alternate form that also applies for singular H and when those equations are solved by the conjugate gradient techniques. Then the only computations involving H are in the form of Aq or AΔq, where q is a vector. The alternative equations have a nonsymmetric left-hand side. Computing AΔq is inexpensive when the number of nonzeros in AΔ is small, and the product Aq can be calculated efficiently in linear time using an indirect algorithm. Generalizations to more complicated models are proposed. The data included 10.2 million final scores on 6.2 million Holsteins and were analyzed by a repeatability model. Comparisons involved the regular and the alternative equations. The model for the second case included simulated AΔ. Solutions were obtained by the preconditioned conjugate gradient algorithm, which works only with symmetric matrices, and by the bi-conjugate gradient stabilized algorithm, which also works with nonsymmetric matrices. The ... Presentar Todo |
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Palabras claves : |
BEST LINEAR UNBIASED PREDICTOR; GENETIC EVALUATION; GENOMIC SELECTION; SINGLE NUCLEOTIDE POLYMORPHISM. |
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Thesagro : |
EVALUACIÓN GENÉTICA. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/12193/1/Computing-procedures-for-genetic-evaluation-including-phenotypic-full-pedigree-and-genomic-information.pdf
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Marc : |
LEADER 02980naa a2200241 a 4500
001 1012841
005 2019-06-18
008 2011 bl uuuu u00u1 u #d
022 $a0022-0302
024 7 $a10.3168/jds.2009-2064$2DOI
100 1 $aMISZTAL, I.
245 $aComputing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information.$h[electronic resource]
260 $c2011
500 $aArticle history: Received January 26, 2009. // Accepted April 29, 2009.
520 $aABSTRACT. Currently, genomic evaluations use multiple-step procedures, which are prone to biases and errors. A single-step procedure may be applicable when genomic predictions can be obtained by modifying the numerator relationship matrix A to H = A + AΔ, where AΔ includes deviations from expected relationships. However, the traditional mixed model equations require H-1, which is usually difficult to obtain for large pedigrees. The computations with H are feasible when the mixed model equations are expressed in an alternate form that also applies for singular H and when those equations are solved by the conjugate gradient techniques. Then the only computations involving H are in the form of Aq or AΔq, where q is a vector. The alternative equations have a nonsymmetric left-hand side. Computing AΔq is inexpensive when the number of nonzeros in AΔ is small, and the product Aq can be calculated efficiently in linear time using an indirect algorithm. Generalizations to more complicated models are proposed. The data included 10.2 million final scores on 6.2 million Holsteins and were analyzed by a repeatability model. Comparisons involved the regular and the alternative equations. The model for the second case included simulated AΔ. Solutions were obtained by the preconditioned conjugate gradient algorithm, which works only with symmetric matrices, and by the bi-conjugate gradient stabilized algorithm, which also works with nonsymmetric matrices. The convergence rate associated with the nonsymmetric solvers was slightly better than that with the symmetric solver for the original equations, although the time per round was twice as much for the nonsymmetric solvers. The convergence rate associated with the alternative equations ranged from 2 times lower without AΔ to 3 times lower for the largest simulated AΔ. When the information attributable to genomics can be expressed as modifications to the numerator relationship matrix, the proposed methodology may allow the upgrading of an existing evaluation to incorporate the genomic information. © American Dairy Science Association, 2009.
650 $aEVALUACIÓN GENÉTICA
653 $aBEST LINEAR UNBIASED PREDICTOR
653 $aGENETIC EVALUATION
653 $aGENOMIC SELECTION
653 $aSINGLE NUCLEOTIDE POLYMORPHISM
700 1 $aLEGARRA, A.
700 1 $aAGUILAR, I.
773 $tJournal of Dairy Science, 2011, 92 (9): 4648-4655. OPEN ACCESS.
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Registro original : |
INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha actual : |
08/10/2019 |
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Actualizado : |
05/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
SOUTO, E.P.F.; PESSOA, C.R.M.; PESSOA, A.F.A.; TROST, M.E.; KOMMERS, G.D.; RIET-CORREA, F.; DANTAS, A.F.M |
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Afiliación : |
Universidade Federal de Campina Grande, Patos, PB.; Universidade Federal de Campina Grande, Patos, PB.; Universidade Federal de Campina Grande , Patos, PB.; Universidade Federal de Santa Maria , Santa Maria, RS.; Universidade Federal de Santa Maria, Santa Maria, RS.; FRANKLIN RIET-CORREA AMARAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Universidade Federal de Campina Grande ? Patos, PB. |
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Título : |
Esophageal pythiosis in an ostrich (Struthio camelus). (Communication). [Ptiose Esofágica em avestrus (Struthio camelus). [Comunicação]. |
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Fecha de publicación : |
2019 |
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Fuente / Imprenta : |
Arquivo Brasileiro de Medicina Veterinaria e Zootecnia, 1 May 2019, Volume 71, Issue 3, Pages 1081-1084. OPEN ACCESS. |
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DOI : |
10.1590/1678-4162-10666 |
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Idioma : |
Inglés |
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Notas : |
Article history:Recebido em 13 de março de 2018/Aceito em 9 de novembro de 2018. |
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Contenido : |
RESUMO.
Uma avestruz-do-pescoço-vermelho, com dois anos de idade, apresentava um nódulo no terço médio do esôfago e foi submetida a procedimento cirúrgico. Histologicamente, observou-se uma área focalmente extensa de necrose estendendo-se da túnica mucosa à muscular, e, em algumas secções, à túnica adventícia. Circundando a área de necrose, observou-se uma reação inflamatória composta principalmente por granulócitos e macrófagos, associada à fibroplasia e neovascularização. Em meio às áreas de necrose e inflamação, verificavam-se numerosas imagens negativas de hifas em seções longitudinais e transversais, melhor apreciadas pela coloração de metenamina nitrato de prata de Grocott. O diagnóstico definitivo de infecção por Pythium insidiosum foi confirmado por imuno-histoquímica. A avestruz recebia água para consumo de um lago localizado em uma área de pastagem, no qual alguns cavalos haviam desenvolvido pitiose cutânea anteriormente. |
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Palabras claves : |
DOENÇA DE AVE; HIFAS; PLATAFORMA SALUD ANIMAL. |
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Thesagro : |
AVESTRUZ. |
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Asunto categoría : |
E16 Enfermedades de los animales |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16717/1/Arq.-Bras.-Med.-Vet.-Zootec.-v.71-n.3-p.1081-1084-2019.pdf
https://www.scielo.br/pdf/abmvz/v71n3/0102-0935-abmvz-71-03-1081.pdf
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Marc : |
LEADER 01929naa a2200265 a 4500
001 1060294
005 2022-09-05
008 2019 bl uuuu u00u1 u #d
024 7 $a10.1590/1678-4162-10666$2DOI
100 1 $aSOUTO, E.P.F.
245 $aEsophageal pythiosis in an ostrich (Struthio camelus). (Communication). [Ptiose Esofágica em avestrus (Struthio camelus). [Comunicação].$h[electronic resource]
260 $c2019
500 $aArticle history:Recebido em 13 de março de 2018/Aceito em 9 de novembro de 2018.
520 $aRESUMO. Uma avestruz-do-pescoço-vermelho, com dois anos de idade, apresentava um nódulo no terço médio do esôfago e foi submetida a procedimento cirúrgico. Histologicamente, observou-se uma área focalmente extensa de necrose estendendo-se da túnica mucosa à muscular, e, em algumas secções, à túnica adventícia. Circundando a área de necrose, observou-se uma reação inflamatória composta principalmente por granulócitos e macrófagos, associada à fibroplasia e neovascularização. Em meio às áreas de necrose e inflamação, verificavam-se numerosas imagens negativas de hifas em seções longitudinais e transversais, melhor apreciadas pela coloração de metenamina nitrato de prata de Grocott. O diagnóstico definitivo de infecção por Pythium insidiosum foi confirmado por imuno-histoquímica. A avestruz recebia água para consumo de um lago localizado em uma área de pastagem, no qual alguns cavalos haviam desenvolvido pitiose cutânea anteriormente.
650 $aAVESTRUZ
653 $aDOENÇA DE AVE
653 $aHIFAS
653 $aPLATAFORMA SALUD ANIMAL
700 1 $aPESSOA, C.R.M.
700 1 $aPESSOA, A.F.A.
700 1 $aTROST, M.E.
700 1 $aKOMMERS, G.D.
700 1 $aRIET-CORREA, F.
700 1 $aDANTAS, A.F.M
773 $tArquivo Brasileiro de Medicina Veterinaria e Zootecnia, 1 May 2019, Volume 71, Issue 3, Pages 1081-1084. OPEN ACCESS.
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