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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA La Estanzuela; INIA Las Brujas. |
Fecha : |
14/11/2015 |
Actualizado : |
05/12/2018 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
MORA, F.; CASTILLO, D.; LADO, B.; MATUS, I.; POLAND, J.; BELZILE, F.; VON ZITZEWITZ, J.; DEL POZO, A. |
Afiliación : |
BETTINA LADO LINDNER, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
Título : |
Genome-wide association mapping of agronomic traits and carbon isotope discrimination in a worldwide germplasm collection of spring wheat using SNP markers. |
Fecha de publicación : |
2015 |
Fuente / Imprenta : |
Molecular Breeding, 2015, v,35, no.2, 12 p. |
ISSN : |
1380-3743 |
DOI : |
10.1007/s11032-015-0264-y |
Idioma : |
Inglés |
Contenido : |
ABSTRACT.
Association mapping has been proposed to identify polymorphisms involved in phenotypic variations and may prove useful in identifying interesting alleles for breeding purposes. Using this approach, a total of 382 cultivars and advanced lines of spring wheat obtained from three breeding programs (Chile, Uruguay and CIMMYT) were evaluated for plant height (PH), kernels per spike (KS), 1,000 kernel weight (TKW), grain yield and carbon isotope discrimination (Δ13C) and tested for genotyping-by-sequencing-derived SNP markers across the hexaploid wheat genome. A Bayesian clustering approach via Markov chain Monte Carlo was performed to examine the genetic differentiation (FST) among different genetic groups. The results indicated the existence of two distinct and strongly differentiated genetic groups. Cluster I contained 215 genotypes (56.3 %), over 60 % (137/215) of which were collected from CIMMYT. Cluster II showed the highest FST value, according to 95 % credible interval. Linkage disequilibrium (LD) among SNPs was calculated for the A, B and D genomes and at the whole-genome level. LD decayed over a longer genetic distance for the D genome than for the A and B genomes. In the A and B genomes, LD declined to 50 % of its initial value at about 2 cM. In the D genome, LD was much more extensive, declining to 50 % of its initial value only at 22 cM. In the whole genome, LD declined to 50 % of its initial value at an average of 4 cM. Important genomic regions associated with complex traits in spring wheat were identified. Selection on these regions may increase the efficiency of the current breeding programs. Although most of the associations were environment specific, some stable associations were detected for Δ13C, KS, PH and TKW. Chromosomes 1A, 3A, 4A and 5A were the most important chromosomes, as they comprised quantitative trait loci (QTL) for Δ13C, a trait that can be used as an indirect tool for increased water-use efficiency in wheat. Environment-specific genomic regions were detected, indicating the presence of QTL-by-environment interaction. To produce suitable genotypes under contrasting water availability conditions, QTL × E interactions (and genotype-by-environment interaction) should be considered in the current spring wheat breeding program.
© 2015, Springer Science+Business Media Dordrecht. MenosABSTRACT.
Association mapping has been proposed to identify polymorphisms involved in phenotypic variations and may prove useful in identifying interesting alleles for breeding purposes. Using this approach, a total of 382 cultivars and advanced lines of spring wheat obtained from three breeding programs (Chile, Uruguay and CIMMYT) were evaluated for plant height (PH), kernels per spike (KS), 1,000 kernel weight (TKW), grain yield and carbon isotope discrimination (Δ13C) and tested for genotyping-by-sequencing-derived SNP markers across the hexaploid wheat genome. A Bayesian clustering approach via Markov chain Monte Carlo was performed to examine the genetic differentiation (FST) among different genetic groups. The results indicated the existence of two distinct and strongly differentiated genetic groups. Cluster I contained 215 genotypes (56.3 %), over 60 % (137/215) of which were collected from CIMMYT. Cluster II showed the highest FST value, according to 95 % credible interval. Linkage disequilibrium (LD) among SNPs was calculated for the A, B and D genomes and at the whole-genome level. LD decayed over a longer genetic distance for the D genome than for the A and B genomes. In the A and B genomes, LD declined to 50 % of its initial value at about 2 cM. In the D genome, LD was much more extensive, declining to 50 % of its initial value only at 22 cM. In the whole genome, LD declined to 50 % of its initial value at an average of 4 cM. Important genomic regions assoc... Presentar Todo |
Palabras claves : |
CARTOGRAFÍA GENÉTICA; ESTRÉS HÍDRICO; ESTRUCTURA GENÉTICA; LOCUS DE UN CARÁCTER CUANTITATIVO; MAPEO ASOCIATIVO; MAPEO DE QTLs; MAPEO POR ASOCIACIÓN; QTL; QUANTITATIVE TRAIT LOCI DETECTION. |
Thesagro : |
FITOMEJORAMIENTO; SEQUIA; TRIGO; TRITICUM AESTIVUM. |
Asunto categoría : |
-- F30 Genética vegetal y fitomejoramiento |
Marc : |
LEADER 03527naa a2200385 a 4500 001 1053879 005 2018-12-05 008 2015 bl uuuu u00u1 u #d 022 $a1380-3743 024 7 $a10.1007/s11032-015-0264-y$2DOI 100 1 $aMORA, F. 245 $aGenome-wide association mapping of agronomic traits and carbon isotope discrimination in a worldwide germplasm collection of spring wheat using SNP markers.$h[electronic resource] 260 $c2015 520 $aABSTRACT. Association mapping has been proposed to identify polymorphisms involved in phenotypic variations and may prove useful in identifying interesting alleles for breeding purposes. Using this approach, a total of 382 cultivars and advanced lines of spring wheat obtained from three breeding programs (Chile, Uruguay and CIMMYT) were evaluated for plant height (PH), kernels per spike (KS), 1,000 kernel weight (TKW), grain yield and carbon isotope discrimination (Δ13C) and tested for genotyping-by-sequencing-derived SNP markers across the hexaploid wheat genome. A Bayesian clustering approach via Markov chain Monte Carlo was performed to examine the genetic differentiation (FST) among different genetic groups. The results indicated the existence of two distinct and strongly differentiated genetic groups. Cluster I contained 215 genotypes (56.3 %), over 60 % (137/215) of which were collected from CIMMYT. Cluster II showed the highest FST value, according to 95 % credible interval. Linkage disequilibrium (LD) among SNPs was calculated for the A, B and D genomes and at the whole-genome level. LD decayed over a longer genetic distance for the D genome than for the A and B genomes. In the A and B genomes, LD declined to 50 % of its initial value at about 2 cM. In the D genome, LD was much more extensive, declining to 50 % of its initial value only at 22 cM. In the whole genome, LD declined to 50 % of its initial value at an average of 4 cM. Important genomic regions associated with complex traits in spring wheat were identified. Selection on these regions may increase the efficiency of the current breeding programs. Although most of the associations were environment specific, some stable associations were detected for Δ13C, KS, PH and TKW. Chromosomes 1A, 3A, 4A and 5A were the most important chromosomes, as they comprised quantitative trait loci (QTL) for Δ13C, a trait that can be used as an indirect tool for increased water-use efficiency in wheat. Environment-specific genomic regions were detected, indicating the presence of QTL-by-environment interaction. To produce suitable genotypes under contrasting water availability conditions, QTL × E interactions (and genotype-by-environment interaction) should be considered in the current spring wheat breeding program. © 2015, Springer Science+Business Media Dordrecht. 650 $aFITOMEJORAMIENTO 650 $aSEQUIA 650 $aTRIGO 650 $aTRITICUM AESTIVUM 653 $aCARTOGRAFÍA GENÉTICA 653 $aESTRÉS HÍDRICO 653 $aESTRUCTURA GENÉTICA 653 $aLOCUS DE UN CARÁCTER CUANTITATIVO 653 $aMAPEO ASOCIATIVO 653 $aMAPEO DE QTLs 653 $aMAPEO POR ASOCIACIÓN 653 $aQTL 653 $aQUANTITATIVE TRAIT LOCI DETECTION 700 1 $aCASTILLO, D. 700 1 $aLADO, B. 700 1 $aMATUS, I. 700 1 $aPOLAND, J. 700 1 $aBELZILE, F. 700 1 $aVON ZITZEWITZ, J. 700 1 $aDEL POZO, A. 773 $tMolecular Breeding, 2015, v,35, no.2, 12 p.
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INIA Las Brujas (LB) |
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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha actual : |
24/11/2022 |
Actualizado : |
25/11/2022 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
Internacional - -- |
Autor : |
BRANCATTI, G.; GARMENDIA, G.; PEREYRA, S.; VERO, S. |
Afiliación : |
GIANELLA BRANCATTI, Área de Microbiología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, Uruguay; GABRIELA GARMENDIA, Área de Microbiología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, Uruguay; SILVIA ANTONIA PEREYRA CORREA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SILVANA VERO, Área de Microbiología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, Uruguay. |
Título : |
Current species composition of Fusarium population affecting the main wheat-growing regions in Uruguay and evolution of their sensitivity to triazoles after long-term application. |
Fecha de publicación : |
2022 |
Fuente / Imprenta : |
International Journal of Pest Management, 2022, vol. 68, issue 4: "Uruguayan Society of Phytopathology (SUFIT): Plant protection for a sustainable agriculture", p.349-358. doi: https://doi.org/10.1080/09670874.2022.2129509 |
ISSN : |
1366-5863 (online) |
DOI : |
10.1080/09670874.2022.2129509 |
Idioma : |
Inglés |
Notas : |
Article history: Received 03 May 2022, Accepted 14 September 2022, Published online: 11 November 2022. -- Corresponding author: Gianella Brancatti - mailto: gia@fcien.edu.uy , Área de Microbiología, Departamento de Biociencias, Facultad de Química, Universidad de la República, General Flores 2124, 11800, Montevideo, Uruguay. -- Funding: This work was supported by the Agencia Nacional de Investigación e Innovación and Comisión Académica de Posgrado. |
Contenido : |
ABSTRACT.- Fusarium head blight (FHB) is a destructive disease of cereal grains caused by several Fusarium species, of which Fusarium graminearum is considered the primary causal agent. In this work 586 pure cultures of Fusarium spp. were obtained from infected grains, of which 64.9% belonged to the Fusarium graminearum species complex. 96.4% of those isolates had 15-acetyldeoxynivalenol genotype and the rest exhibited Nivalenol genotype. The second most predominant species was F. poae (19.1%) followed by F. avenaceum (8.2%) and F. tricinctum (4.6%). An increase in the tolerance to tebuconazole of Uruguayan Fusarium spp. isolates was detected.© 2022 Informa UK Limited, trading as Taylor & Francis Group |
Palabras claves : |
Fungicide sensitivity; Fusarium graminearum; Fusarium head blight; Triazoles; Wheat. |
Asunto categoría : |
H20 Enfermedades de las plantas |
Marc : |
LEADER 02166naa a2200253 a 4500 001 1063781 005 2022-11-25 008 2022 bl uuuu u00u1 u #d 022 $a1366-5863 (online) 024 7 $a10.1080/09670874.2022.2129509$2DOI 100 1 $aBRANCATTI, G. 245 $aCurrent species composition of Fusarium population affecting the main wheat-growing regions in Uruguay and evolution of their sensitivity to triazoles after long-term application.$h[electronic resource] 260 $c2022 500 $aArticle history: Received 03 May 2022, Accepted 14 September 2022, Published online: 11 November 2022. -- Corresponding author: Gianella Brancatti - mailto: gia@fcien.edu.uy , Área de Microbiología, Departamento de Biociencias, Facultad de Química, Universidad de la República, General Flores 2124, 11800, Montevideo, Uruguay. -- Funding: This work was supported by the Agencia Nacional de Investigación e Innovación and Comisión Académica de Posgrado. 520 $aABSTRACT.- Fusarium head blight (FHB) is a destructive disease of cereal grains caused by several Fusarium species, of which Fusarium graminearum is considered the primary causal agent. In this work 586 pure cultures of Fusarium spp. were obtained from infected grains, of which 64.9% belonged to the Fusarium graminearum species complex. 96.4% of those isolates had 15-acetyldeoxynivalenol genotype and the rest exhibited Nivalenol genotype. The second most predominant species was F. poae (19.1%) followed by F. avenaceum (8.2%) and F. tricinctum (4.6%). An increase in the tolerance to tebuconazole of Uruguayan Fusarium spp. isolates was detected.© 2022 Informa UK Limited, trading as Taylor & Francis Group 653 $aFungicide sensitivity 653 $aFusarium graminearum 653 $aFusarium head blight 653 $aTriazoles 653 $aWheat 700 1 $aGARMENDIA, G. 700 1 $aPEREYRA, S. 700 1 $aVERO, S. 773 $tInternational Journal of Pest Management, 2022, vol. 68, issue 4: "Uruguayan Society of Phytopathology (SUFIT): Plant protection for a sustainable agriculture", p.349-358. doi: https://doi.org/10.1080/09670874.2022.2129509
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