Fecha/hora: 03/06/2024 05:53:27

Biblioteca(s): | INIA Las Brujas.
Tipo de la producción científica: | Artículos en Revistas Indexadas Internacionales
Circulación/Nivel: | Internacional - --
Fecha corriente: | 15/03/2022
Fecha de la última actualización: | 05/10/2022
Autoria: | MENA, E.; GARAYCOCHEA, S.; STEWART, S.; MONTESANO, M.; PONCE DE LEÓN, I.
Afiliación: | EILYN MENA, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable; SILVIA RAQUEL GARAYCOCHEA SOLSONA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SILVINA MARIA STEWART SONEIRA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARCOS MONTESANO, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable; INÉS PONCE DE LEÓN, Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable.
Título: | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.
Año de publicación: | 2022
Fuente/Imprenta: | BMC Genomics, 2022, volume 23, no. 1, 175. OPEN ACCESS. doi: https://doi.org/10.1186/s12864-022-08413-y
ISSN: | 1471-2164
DOI: | 10.1186/s12864-022-08413-y
Idioma: | Inglés

Notas:

Article history: Received 21 October 2021; Accepted 23 February 2022; Published 03 March 2022.
This work was funded by "Agencia Nacional de Investigación e Innovación (ANII) (grant RTS-1-2014, and graduate fellowship)" Uruguay, "Programa de Desarrollo de las Ciencias Básicas (PEDECIBA)" Uruguay, and "Programa para Grupo de I + D Comisión Sectorial de Investigación Científica, Universidad de la República", Uruguay.
Author information: Eilyn Mena and Silvia Garaycochea contributed equally to this work.
Supplementary Information: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08413-y#Sec14

Contenido:

ABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species.
Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates.

Palabras-Clave: | Diaporthe pathogens; Effectors; Genomes; Pathogenicity factors; RNAseq; Secretome; Soybean.
Categoría del tema: | F30 Genética vegetal y fitomejoramiento

URL:

http://www.ainfo.inia.uy/digital/bitstream/item/16809/1/s12864-022-08413-y.pdf
https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-022-08413-y.pdf

Registro original: | INIA Las Brujas (LB)
Ejemplares: | LB - (103020-1) - PXI - AP - DD - PP/BMC Genomics/2022 -  -  - DIS