Fecha/hora: 16/06/2024 01:23:10

Biblioteca(s): | INIA Las Brujas.
Fecha corriente: | 24/07/2020
Fecha de la última actualización: | 24/07/2020
Autoria: | LOURENCO, D.; LEGARRA, A.; TSURUTA, S.; MASUDA, Y.; AGUILAR, I.; MISZTAL, I.
Afiliación: | DANIELA LOURENCO, Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602, USA; ANDRÉS LEGARRA, Institut National de la Recherche Agronomique, UMR1388 GenPhySE, 31326 Castanet Tolosan, France; SHOGO TSURUTA, Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602, USA; YUTAKA MASUDA, Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602, USA; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; IGNACY MISZTAL, Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602, USA.
Título: | Single-step genomic evaluations from theory to practice: using snp chips and sequence data in blupf90.
Año de publicación: | 2020
Fuente/Imprenta: | Genes, July 2020. Volume 11, Issue 7, Article number 790, Pages 1-32. Open Access. Doi: https://doi.org/10.3390/genes11070790
ISSN: | 2073-4425
DOI: | 10.3390/genes11070790
Idioma: | Inglés

Notas:

Article history: Received: 19 June 2020 / Revised: 3 July 2020 / Accepted: 6 July 2020 / Published: 14 July 2020.
(This article belongs to the Special Issue Genomic Prediction Methods for Sequencing Data): 
https://www.mdpi.com/journal/genes/special_issues/Genomic_Prediction

Contenido:

ABSTRACT.
Single-step genomic evaluation became a standard procedure in livestock breeding, and the main reason is the ability to combine all pedigree, phenotypes, and genotypes available into one single evaluation, without the need of post-analysis processing. Therefore, the incorporation of data on genotyped and non-genotyped animals in this method is straightforward. Since 2009, two main implementations of single-step were proposed. One is called single-step genomic best linear unbiased prediction (ssGBLUP) and uses single nucleotide polymorphism (SNP) to construct the genomic relationship matrix; the other is the single-step Bayesian regression (ssBR), which is a marker effect model. Under the same assumptions, both models are equivalent. In this review, we focus solely on ssGBLUP. The implementation of ssGBLUP into the BLUPF90 software suite was done in 2009, and since then, several changes were made to make ssGBLUP flexible to any model, number of traits, number of phenotypes, and number of genotyped animals. Single-step GBLUP from the BLUPF90 software suite has been used for genomic evaluations worldwide. In this review, we will show theoretical developments and numerical examples of ssGBLUP using SNP data from regular chips to sequence data.

Palabras-Clave: | Genome-wide association; Genomic prediction; Genomic selection; SINGLE-STEP GENOMIC BLUP.
Categoría del tema: | A50 Investigación agraria

URL:

https://www.mdpi.com/2073-4425/11/7/790/pdf
https://www.mdpi.com/2073-4425/11/7/790/review_report

Registro original: | INIA Las Brujas (LB)
Ejemplares: | LB - (102374-1) - PXI - AP - DD - PP/GENES/2020 -  -  - DIS